An official website of the United States government
ABSTRACT Estimates of movement costs are essential for understanding energetic and life-history trade-offs. Although overall dynamic body acceleration (ODBA) derived from accelerometer data is widely used as a proxy for energy expenditure (EE) in free-ranging animals, its utility has not been tested in species that predominately use body rotations or exploit environmental energy for movement. We tested a suite of sensor-derived movement metrics as proxies for EE in two species of albatrosses, which routinely use dynamic soaring to extract energy from the wind to reduce movement costs. Birds were fitted with a combined heart-rate, accelerometer, magnetometer and GPS logger, and relationships between movement metrics and heart rate-derived V̇O2, an indirect measure of EE, were analyzed during different flight and activity modes. When birds were exclusively soaring, a metric derived from angular velocity on the yaw axis provided a useful proxy of EE. Thus, body rotations involved in dynamic soaring have clear energetic costs, albeit considerably lower than those of the muscle contractions required for flapping flight. We found that ODBA was not a useful proxy for EE in albatrosses when birds were exclusively soaring. As albatrosses spend much of their foraging trips soaring, ODBA alone was a poor predictor of EE in albatrosses. Despite the lower percentage of time flapping, the number of flaps was a useful metric when comparing EE across foraging trips. Our findings highlight that alternative metrics, beyond ODBA, may be required to estimate energy expenditure from inertial sensors in animals whose movements involve extensive body rotations.
more »
« less
Hidden Markov models identify major movement modes in accelerometer and magnetometer data from four albatross species
Abstract Background Inertial measurement units (IMUs) with high-resolution sensors such as accelerometers are now used extensively to study fine-scale behavior in a wide range of marine and terrestrial animals. Robust and practical methods are required for the computationally-demanding analysis of the resulting large datasets, particularly for automating classification routines that construct behavioral time series and time-activity budgets. Magnetometers are used increasingly to study behavior, but it is not clear how these sensors contribute to the accuracy of behavioral classification methods. Development of effective classification methodology is key to understanding energetic and life-history implications of foraging and other behaviors. Methods We deployed accelerometers and magnetometers on four species of free-ranging albatrosses and evaluated the ability of unsupervised hidden Markov models (HMMs) to identify three major modalities in their behavior: ‘flapping flight’, ‘soaring flight’, and ‘on-water’. The relative contribution of each sensor to classification accuracy was measured by comparing HMM-inferred states with expert classifications identified from stereotypic patterns observed in sensor data. Results HMMs provided a flexible and easily interpretable means of classifying behavior from sensor data. Model accuracy was high overall (92%), but varied across behavioral states (87.6, 93.1 and 91.7% for ‘flapping flight’, ‘soaring flight’ and ‘on-water’, respectively). Models built on accelerometer data alone were as accurate as those that also included magnetometer data; however, the latter were useful for investigating slow and periodic behaviors such as dynamic soaring at a fine scale. Conclusions The use of IMUs in behavioral studies produces large data sets, necessitating the development of computationally-efficient methods to automate behavioral classification in order to synthesize and interpret underlying patterns. HMMs provide an accessible and robust framework for analyzing complex IMU datasets and comparing behavioral variation among taxa across habitats, time and space.
more »
« less
- Award ID(s):
- 1651904
- PAR ID:
- 10313608
- Date Published:
- Journal Name:
- Movement Ecology
- Volume:
- 9
- Issue:
- 1
- ISSN:
- 2051-3933
- Format(s):
- Medium: X
- Sponsoring Org:
- National Science Foundation
More Like this
-
-
While the availability of low-cost micro electro-mechanical systems (MEMS) accelerometers, gyroscopes, and magnetometers initially seemed to promise the possibility of using them to easily track the position and orientation of virtually any object that they could be attached to, this promise has not yet been fulfilled. Navigation-grade accelerometers and gyroscopes have long been the basis for tracking ships and aircraft, but the signals from low-cost MEMS accelerometers and gyroscopes are still orders of magnitude poorer in quality (e.g., bias stability). Therefore, the applications of MEMS inertial measurement units (IMUs), containing tri-axial accelerometers and gyroscopes, are currently not as extensive as they were expected to be. Even the addition of MEMS tri-axial magnetometers, to conform magnetic, angular rate, and gravity (MARG) sensor modules, has not fully overcome the challenges involved in using these modules for long-term orientation estimation, which would be of great benefit for the tracking of human–computer hand-held controllers or tracking of Internet-Of-Things (IoT) devices. Here, we present an algorithm, GMVDμK (or simply GMVDK), that aims at taking full advantage of all the signals available from a MARG module to robustly estimate its orientation, while preventing damaging overcorrections, within the context of a human–computer interaction application. Through experimental comparison, we show that GMVDK is more robust to magnetic disturbances than three other MARG orientation estimation algorithms in representative trials.more » « less
-
This article reports an adaptive sensor bias observer and attitude observer operating directly on [Formula: see text] for true-north gyrocompass systems that utilize six-degree-of-freedom inertial measurement units (IMUs) with three-axis accelerometers and three-axis angular rate gyroscopes (without magnetometers). Most present-day low-cost robotic vehicles employ attitude estimation systems that employ microelectromechanical system (MEMS) magnetometers, angular rate gyros, and accelerometers to estimate magnetic attitude (roll, pitch, and magnetic heading) with limited heading accuracy. Present-day MEMS gyros are not sensitive enough to dynamically detect the Earth’s rotation, and thus cannot be used to estimate true-north geodetic heading. Relying on magnetic compasses can be problematic for vehicles that operate in environments with magnetic anomalies and those requiring high-accuracy navigation as the limited accuracy ([Formula: see text] error) of magnetic compasses is typically the largest error source in underwater vehicle navigation systems. Moreover, magnetic compasses need to undergo time-consuming recalibration for hard-iron and soft-iron errors every time a vehicle is reconfigured with a new instrument or other payload, as very frequently occurs on oceanographic marine vehicles. In contrast, the gyrocompass system reported herein utilizes fiber optic gyroscope (FOG) IMU angular rate gyro and MEMS accelerometer measurements (without magnetometers) to dynamically estimate the instrument’s time-varying true-north attitude (roll, pitch, and geodetic heading) in real-time while the instrument is subject to a priori unknown rotations. This gyrocompass system is immune to magnetic anomalies and does not require recalibration every time a new payload is added to or removed from the vehicle. Stability proofs for the reported bias and attitude observers, preliminary simulations, and a full-scale vehicle trial are reported that suggest the viability of the true-north gyrocompass system to provide dynamic real-time true-north heading, pitch, and roll utilizing a comparatively low-cost FOG IMU.more » « less
-
Abstract Bio-logging devices equipped with inertial measurement units—particularly accelerometers, magnetometers, and pressure sensors—have revolutionized our ability to study animals as necessary electronics have gotten smaller and more affordable over the last two decades. These animal-attached tags allow for fine scale determination of behavior in the absence of direct observation, particularly useful in the marine realm, where direct observation is often impossible, and recent devices can integrate more power hungry and sensitive instruments, such as hydrophones, cameras, and physiological sensors. To convert the raw voltages recorded by bio-logging sensors into biologically meaningful metrics of orientation (e.g., pitch, roll and heading), motion (e.g., speed, specific acceleration) and position (e.g., depth and spatial coordinates), we developed a series of MATLAB tools and online instructional tutorials. Our tools are adaptable for a variety of devices, though we focus specifically on the integration of video, audio, 3-axis accelerometers, 3-axis magnetometers, 3-axis gyroscopes, pressure, temperature, light and GPS data that are the standard outputs from Customized Animal Tracking Solutions (CATS) video tags. Our tools were developed and tested on cetacean data but are designed to be modular and adaptable for a variety of marine and terrestrial species. In this text, we describe how to use these tools, the theories and ideas behind their development, and ideas and additional tools for applying the outputs of the process to biological research. We additionally explore and address common errors that can occur during processing and discuss future applications. All code is provided open source and is designed to be useful to both novice and experienced programmers.more » « less
-
To study sensorimotor behaviour in wild animals, it is necessary to synchronously record the sensory inputs available to the animal, and its movements. To do this, we have developed a biologging device that can record the primary sensory information and the associated movements during foraging and navigating in echolocating bats. This 2.6‐g tag records the sonar calls and echoes from an ultrasonic microphone, while simultaneously sampling fine‐scale movement in three dimensions from wideband accelerometers and magnetometers. In this study, we tested the tag on an European noctula Nyctalus noctula during target approaches and on four big brown bats Eptesicus fuscus during prey interception in a flight room. We show that the tag records both the outgoing calls and echoes returning from objects at biologically relevant distances. Inertial sensor data enables the detection of behavioural events such as flying, turning, and resting. In addition, individual wing‐beats can be tracked and synchronized to the bat's sound emissions to study the coordination of different motor events. By recording the primary acoustic flow of bats concomitant with associated behaviours on a very fine time‐scale, this type of biologging method will foster a deeper understanding of how sensory inputs guide feeding behaviours in the wild.more » « less
- Free Publicly Accessible Full Text
-
Accepted Manuscript1.0
- Journal Article:
- https://doi.org/10.1186/s40462-021-00243-z
