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Title: An Open-Source, Durable, and Low-Cost Alternative to Commercially Available Soil Temperature Data Loggers
Soil temperatures play an important role in determining the distribution and function of organisms. However, soil temperature is decoupled from air temperature and varies widely in space. Characterizing and predicting soil temperature requires large and expensive networks of data loggers. We developed an open-source soil temperature data logger and created online resources to ensure our design was accessible. We tested data loggers constructed by students, with little prior electronics experience, in the lab, and in the field in Alaska. The do-it-yourself (DIY) data logger was comparably accurate to a commercial system with a mean absolute error of 2% from −20–0 °C and 1% from 0–20 °C. They captured accurate soil temperature data and performed reliably in the field with less than 10% failing in the first year of deployment. The DIY loggers were ~1.7–7 times less expensive than commercial systems. This work has the potential to increase the spatial resolution of soil temperature monitoring and serve as a powerful educational tool. The DIY soil temperature data logger will reduce data collection costs and improve our understanding of species distributions and ecological processes. It also provides an educational resource to enhance STEM, accessibility, inclusivity, and engagement.
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1637459 2103539
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National Science Foundation
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Using the offline decoder and postprocessor, the model performed at 36.23% sensitivity with 9.52 FAs per 24 hours. The trained model was then evaluated with the online modules. The current performance of the overall online system is 45.80% sensitivity with 28.14 FAs per 24 hours. Table 2 summarizes the performances of these systems. The performance of the online system deviates from the offline P1 model because the online postprocessor fails to combine the events as the seizure probability fluctuates during an event. The modules in the online system add a total of 11.1 seconds of delay for processing each second of the data, as shown in Figure 3. In practice, we also count the time for loading the model and starting the visualizer block. When we consider these facts, the system consumes 15 seconds to display the first hypothesis. The system detects seizure onsets with an average latency of 15 seconds. Implementing an automatic seizure detection model in real time is not trivial. We used a variety of techniques such as the file locking mechanism, multithreading, circular buffers, real-time event decoding, and signal-decision plotting to realize the system. A video demonstrating the system is available at: The final conference submission will include a more detailed analysis of the online performance of each module. ACKNOWLEDGMENTS Research reported in this publication was most recently supported by the National Science Foundation Partnership for Innovation award number IIP-1827565 and the Pennsylvania Commonwealth Universal Research Enhancement Program (PA CURE). Any opinions, findings, and conclusions or recommendations expressed in this material are those of the author(s) and do not necessarily reflect the official views of any of these organizations. REFERENCES [1] A. Craik, Y. He, and J. L. Contreras-Vidal, “Deep learning for electroencephalogram (EEG) classification tasks: a review,” J. Neural Eng., vol. 16, no. 3, p. 031001, 2019. [2] A. C. Bridi, T. Q. Louro, and R. C. L. Da Silva, “Clinical Alarms in intensive care: implications of alarm fatigue for the safety of patients,” Rev. Lat. Am. Enfermagem, vol. 22, no. 6, p. 1034, 2014. [3] M. Golmohammadi, V. Shah, I. Obeid, and J. Picone, “Deep Learning Approaches for Automatic Seizure Detection from Scalp Electroencephalograms,” in Signal Processing in Medicine and Biology: Emerging Trends in Research and Applications, 1st ed., I. Obeid, I. Selesnick, and J. Picone, Eds. New York, New York, USA: Springer, 2020, pp. 233–274. [4] “CFM Olympic Brainz Monitor.” [Online]. Available: [Accessed: 17-Jul-2020]. [5] M. L. Scheuer, S. B. Wilson, A. Antony, G. Ghearing, A. Urban, and A. I. Bagic, “Seizure Detection: Interreader Agreement and Detection Algorithm Assessments Using a Large Dataset,” J. Clin. Neurophysiol., 2020. [6] A. Harati, M. Golmohammadi, S. Lopez, I. Obeid, and J. 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