More Like this

1. Effects of Thermodynamics, Dynamics and Aerosols on Cirrus Clouds Based on In Situ Observations and NCAR CAM6 Model

   https://doi.org/10.5194/acp-2020-497  

   Patnaude, Ryan ; Diao, Minghui ; Liu, Xiaohong ; Chu, Suqian ( July 2020 , Atmospheric chemistry and physics discussion)

   Cirrus cloud radiative effects are largely affected by ice microphysical properties, including ice water content (IWC), ice crystal number concentration (Ni) and mean diameter (Di). These characteristics vary significantly due to thermodynamic, dynamical and aerosol conditions. In this work, a global-scale observation dataset is used to examine regional variations of cirrus cloud microphysical properties, as well as several key controlling factors, i.e., temperature, relative humidity with respect to ice (RHi), vertical velocity (w), and aerosol number concentrations (Na). Results are compared with simulations from the National Center for Atmospheric Research (NCAR) Community Atmosphere Model version 6 (CAM6). The differences between simulations and observations are found to vary with latitude and temperature. Specifically, simulations are found to underestimate IWC by a factor of 5–30 in all regions. Simulated Ni is overestimated in most regions except Northern Hemisphere midlatitude and polar regions. Simulated Di is underestimated, especially for warmer conditions (−50 °C to −40 °C) and higher Na, possibly due to less effective ice particle growth/sedimentation and weaker aerosol indirect effects, respectively. For RHi effects, the frequency and magnitude of ice supersaturation is underestimated in simulations for clear-sky conditions, and the simulated IWC and Ni show maximum values at 80 % RHi instead of 110 %more »as observed. For w effects, both observations and simulations show variances of w (σw) decreasing from tropics to polar regions, but simulations show much higher σw for in-cloud condition than clear-sky condition. These findings provide an observation-based guideline for improving simulated ice microphysical properties and their relationships with key controlling factors at various geographical locations.« less
2. Microphysical processes producing high ice water contents (HIWCs) in tropical convective clouds during the HAIC-HIWC field campaign: evaluation of simulations using bulk microphysical schemes

   https://doi.org/10.5194/acp-21-6919-2021  

   Huang, Yongjie ; Wu, Wei ; McFarquhar, Greg M. ; Wang, Xuguang ; Morrison, Hugh ; Ryzhkov, Alexander ; Hu, Yachao ; Wolde, Mengistu ; Nguyen, Cuong ; Schwarzenboeck, Alfons ; et al ( January 2021 , Atmospheric Chemistry and Physics)

   Abstract. Regions with high ice water content (HIWC), composed of mainly small ice crystals, frequently occur over convective clouds in the tropics. Such regions can have median mass diameters (MMDs) <300 µm and equivalent radar reflectivities <20 dBZ. To explore formation mechanisms for these HIWCs, high-resolution simulations of tropical convective clouds observed on 26 May 2015 during the High Altitude Ice Crystals – High Ice Water Content (HAIC-HIWC) international field campaign based out of Cayenne, French Guiana, are conducted using the Weather Research and Forecasting (WRF) model with four different bulk microphysics schemes: the WRF single‐moment 6‐class microphysics scheme (WSM6), the Morrison scheme, and the Predicted Particle Properties (P3) scheme with one- and two-ice options. The simulations are evaluated against data from airborne radar and multiple cloud microphysics probes installed on the French Falcon 20 and Canadian National Research Council (NRC) Convair 580 sampling clouds at different heights. WRF simulations with different microphysics schemes generally reproduce the vertical profiles of temperature, dew-point temperature, and winds during this event compared with radiosonde data, and the coverage and evolution of this tropical convective system compared to satellite retrievals. All of the simulations overestimate the intensity and spatial extent of radar reflectivity by over 30 % above themore »melting layer compared to the airborne X-band radar reflectivity data. They also miss the peak of the observed ice number distribution function for 0.1« less
3. Florida mangrove saltmarsh reference surface soils

   https://doi.org/10.6073/pasta/0e08cbe07c84488cb7b9dd16669946d0  

   Lewis, David Bruce ( January 2021 )

   Abstract

   Site description. This data package consists of data obtained from sampling surface soil (the 0-7.6 cm depth profile) in black mangrove (Avicennia germinans) dominated forest and black needlerush (Juncus roemerianus) saltmarsh along the Gulf of Mexico coastline in peninsular west-central Florida, USA. This location has a subtropical climate with mean daily temperatures ranging from 15.4 °C in January to 27.8 °C in August, and annual precipitation of 1336 mm. Precipitation falls as rain primarily between June and September. Tides are semi-diurnal, with 0.57 m median amplitudes during the year preceding sampling (U.S. NOAA National Ocean Service, Clearwater Beach, Florida, station 8726724). Sea-level rise is 4.0 ± 0.6 mm per year (1973-2020 trend, mean ± 95 % confidence interval, NOAA NOS Clearwater Beach station). The A. germinans mangrove zone is either adjacent to water or fringed on the seaward side by a narrow band of red mangrove (Rhizophora mangle). A near-monoculture of J. roemerianus is often adjacent to and immediately landward of the A. germinans zone. The transition from the mangrove to the J. roemerianus zone is variable in our study area. An abrupt edge between closed-canopy mangrove and J. roemerianus monoculture may extend for up to several hundred meters in some locations, while other stretches of ecotone present a gradual transition where smaller, widely spaced trees are interspersed into the herbaceous marsh. Juncus roemerianus then extends landward to a high marsh patchwork of succulent halophytes (including Salicornia bigellovi, Sesuvium sp., and Batis maritima), scattered dwarf mangrove, and salt pans, followed in turn by upland vegetation that includes Pinus sp. and Serenoa repens. Field design and sample collection. We established three study sites spaced at approximately 5 km intervals along the western coastline of the central Florida peninsula. The sites consisted of the Salt Springs (28.3298°, -82.7274°), Energy Marine Center (28.2903°, -82.7278°), and Green Key (28.2530°, -82.7496°) sites on the Gulf of Mexico coastline in Pasco County, Florida, USA. At each site, we established three plot pairs, each consisting of one saltmarsh plot and one mangrove plot. Plots were 50 m^2 in size. Plots pairs within a site were separated by 230-1070 m, and the mangrove and saltmarsh plots composing a pair were 70-170 m apart. All plot pairs consisted of directly adjacent patches of mangrove forest and J. roemerianus saltmarsh, with the mangrove forests exhibiting a closed canopy and a tree architecture (height 4-6 m, crown width 1.5-3 m). Mangrove plots were located at approximately the midpoint between the seaward edge (water-mangrove interface) and landward edge (mangrove-marsh interface) of the mangrove zone. Saltmarsh plots were located 20-25 m away from any mangrove trees and into the J. roemerianus zone (i.e., landward from the mangrove-marsh interface). Plot pairs were coarsely similar in geomorphic setting, as all were located on the Gulf of Mexico coastline, rather than within major sheltering formations like Tampa Bay, and all plot pairs fit the tide-dominated domain of the Woodroffe classification (Woodroffe, 2002, &#34;Coasts: Form, Process and Evolution&#34;, Cambridge University Press), given their conspicuous semi-diurnal tides. There was nevertheless some geomorphic variation, as some plot pairs were directly open to the Gulf of Mexico while others sat behind keys and spits or along small tidal creeks. Our use of a plot-pair approach is intended to control for this geomorphic variation. Plot center elevations (cm above mean sea level, NAVD 88) were estimated by overlaying the plot locations determined with a global positioning system (Garmin GPS 60, Olathe, KS, USA) on a LiDAR-derived bare-earth digital elevation model (Dewberry, Inc., 2019). The digital elevation model had a vertical accuracy of ± 10 cm (95 % CI) and a horizontal accuracy of ± 116 cm (95 % CI). Soil samples were collected via coring at low tide in June 2011. From each plot, we collected a composite soil sample consisting of three discrete 5.1 cm diameter soil cores taken at equidistant points to 7.6 cm depth. Cores were taken by tapping a sleeve into the soil until its top was flush with the soil surface, sliding a hand under the core, and lifting it up. Cores were then capped and transferred on ice to our laboratory at the University of South Florida (Tampa, Florida, USA), where they were combined in plastic zipper bags, and homogenized by hand into plot-level composite samples on the day they were collected. A damp soil subsample was immediately taken from each composite sample to initiate 1 y incubations for determination of active C and N (see below). The remainder of each composite sample was then placed in a drying oven (60 °C) for 1 week with frequent mixing of the soil to prevent aggregation and liberate water. Organic wetland soils are sometimes dried at 70 °C, however high drying temperatures can volatilize non-water liquids and oxidize and decompose organic matter, so 50 °C is also a common drying temperature for organic soils (Gardner 1986, &#34;Methods of Soil Analysis: Part 1&#34;, Soil Science Society of America); we accordingly chose 60 °C as a compromise between sufficient water removal and avoidance of non-water mass loss. Bulk density was determined as soil dry mass per core volume (adding back the dry mass equivalent of the damp subsample removed prior to drying). Dried subsamples were obtained for determination of soil organic matter (SOM), mineral texture composition, and extractable and total carbon (C) and nitrogen (N) within the following week. Sample analyses. A dried subsample was apportioned from each composite sample to determine SOM as mass loss on ignition at 550 °C for 4 h. After organic matter was removed from soil via ignition, mineral particle size composition was determined using a combination of wet sieving and density separation in 49 mM (3 %) sodium hexametaphosphate ((NaPO_3)_6) following procedures in Kettler et al. (2001, Soil Science Society of America Journal 65, 849-852). The percentage of dry soil mass composed of silt and clay particles (hereafter, fines) was calculated as the mass lost from dispersed mineral soil after sieving (0.053 mm mesh sieve). Fines could have been slightly underestimated if any clay particles were burned off during the preceding ignition of soil. An additional subsample was taken from each composite sample to determine extractable N and organic C concentrations via 0.5 M potassium sulfate (K_2SO_4) extractions. We combined soil and extractant (ratio of 1 g dry soil:5 mL extractant) in plastic bottles, reciprocally shook the slurry for 1 h at 120 rpm, and then gravity filtered it through Fisher G6 (1.6 μm pore size) glass fiber filters, followed by colorimetric detection of nitrite (NO_2^-) &#43; nitrate (NO_3^-) and ammonium (NH_4^&#43;) in the filtrate (Hood Nowotny et al., 2010,Soil Science Society of America Journal 74, 1018-1027) using a microplate spectrophotometer (Biotek Epoch, Winooski, VT, USA). Filtrate was also analyzed for dissolved organic C (referred to hereafter as extractable organic C) and total dissolved N via combustion and oxidation followed by detection of the evolved CO_2 and N oxide gases on a Formacs HT TOC/TN analyzer (Skalar, Breda, The Netherlands). Extractable organic N was then computed as total dissolved N in filtrate minus extractable mineral N (itself the sum of extractable NH_4-N and NO_2-N &#43; NO_3-N). We determined soil total C and N from dried, milled subsamples subjected to elemental analysis (ECS 4010, Costech, Inc., Valencia, CA, USA) at the University of South Florida Stable Isotope Laboratory. Median concentration of inorganic C in unvegetated surface soil at our sites is 0.5 % of soil mass (Anderson, 2019, Univ. of South Florida M.S. thesis via methods in Wang et al., 2011, Environmental Monitoring and Assessment 174, 241-257). Inorganic C concentrations are likely even lower in our samples from under vegetation, where organic matter would dilute the contribution of inorganic C to soil mass. Nevertheless, the presence of a small inorganic C pool in our soils may be counted in the total C values we report. Extractable organic C is necessarily of organic C origin given the method (sparging with HCl) used in detection. Active C and N represent the fractions of organic C and N that are mineralizable by soil microorganisms under aerobic conditions in long-term soil incubations. To quantify active C and N, 60 g of field-moist soil were apportioned from each composite sample, placed in a filtration apparatus, and incubated in the dark at 25 °C and field capacity moisture for 365 d (as in Lewis et al., 2014, Ecosphere 5, art59). Moisture levels were maintained by frequently weighing incubated soil and wetting them up to target mass. Daily CO_2 flux was quantified on 29 occasions at 0.5-3 week intervals during the incubation period (with shorter intervals earlier in the incubation), and these per day flux rates were integrated over the 365 d period to compute an estimate of active C. Observations of per day flux were made by sealing samples overnight in airtight chambers fitted with septa and quantifying headspace CO_2 accumulation by injecting headspace samples (obtained through the septa via needle and syringe) into an infrared gas analyzer (PP Systems EGM 4, Amesbury, MA, USA). To estimate active N, each incubated sample was leached with a C and N free, 35 psu solution containing micronutrients (Nadelhoffer, 1990, Soil Science Society of America Journal 54, 411-415) on 19 occasions at increasing 1-6 week intervals during the 365 d incubation, and then extracted in 0.5 M K_2SO_4 at the end of the incubation in order to remove any residual mineral N. Active N was then quantified as the total mass of mineral N leached and extracted. Mineral N in leached and extracted solutions was detected as NH_4-N and NO_2-N &#43; NO_3-N via colorimetry as above. This incubation technique precludes new C and N inputs and persistently leaches mineral N, forcing microorganisms to meet demand by mineralizing existing pools, and thereby directly assays the potential activity of soil organic C and N pools present at the time of soil sampling. Because this analysis commences with disrupting soil physical structure, it is biased toward higher estimates of active fractions. Calculations. Non-mobile C and N fractions were computed as total C and N concentrations minus the extractable and active fractions of each element. This data package reports surface-soil constituents (moisture, fines, SOM, and C and N pools and fractions) in both gravimetric units (mass constituent / mass soil) and areal units (mass constituent / soil surface area integrated through 7.6 cm soil depth, the depth of sampling). Areal concentrations were computed as X × D × 7.6, where X is the gravimetric concentration of a soil constituent, D is soil bulk density (g dry soil / cm^3), and 7.6 is the sampling depth in cm.
   More>>
4. Effects of thermodynamics, dynamics and aerosols on cirrus clouds based on in situ observations and NCAR CAM6

   https://doi.org/10.5194/acp-21-1835-2021  

   Patnaude, Ryan ; Diao, Minghui ; Liu, Xiaohong ; Chu, Suqian ( January 2021 , Atmospheric Chemistry and Physics)

   Abstract. Cirrus cloud radiative effects are largely affected byice microphysical properties, including ice water content (IWC), ice crystalnumber concentration (Ni) and mean diameter (Di). These characteristics varysignificantly due to thermodynamic, dynamical and aerosol conditions. Inthis work, a global-scale observation dataset is used to examine regionalvariations of cirrus cloud microphysical properties, as well as several keycontrolling factors, i.e., temperature, relative humidity with respect toice (RHi), vertical velocity (w) and aerosol number concentrations (Na).Results are compared with simulations from the National Center forAtmospheric Research (NCAR) Community Atmosphere Model version 6 (CAM6).Observed and simulated ice mass and number concentrations are constrained to≥62.5 µm to reduce potential uncertainty from shattered ice indata collection. The differences between simulations and observations arefound to vary with latitude and temperature. Comparing with averagedobservations at ∼100 km horizontal scale, simulations arefound to underestimate (overestimate) IWC by a factor of 3–10 in theNorthern (Southern) Hemisphere. Simulated Ni is overestimated in mostregions except the Northern Hemisphere midlatitudes. Simulated Di isunderestimated by a factor of 2, especially for warmer conditions(−50 to −40 ∘C), possibly due tomisrepresentation of ice particle growth/sedimentation. For RHi effects, thefrequency and magnitude of ice supersaturation are underestimated insimulations for clear-sky conditions. The simulated IWC and Ni show bimodaldistributions with maximum valuesmore »at 100 % and 80 % RHi, differing fromthe unimodal distributions that peak at 100 % in the observations. For weffects, both observations and simulations show variances of w (σw) decreasing from the tropics to polar regions, but simulations show muchhigher σw for the in-cloud condition than the clear-sky condition.Compared with observations, simulations show weaker aerosol indirect effectswith a smaller increase of IWC and Di at higher Na. These findings provide anobservation-based guideline for improving simulated ice microphysicalproperties and their relationships with key controlling factors at variousgeographical locations.« less
5. Phosphonate coating of commercial iron oxide nanoparticles for nanowarming cryopreserved samples

   https://doi.org/10.1039/D1TB02483C  

   Pasek-Allen, Jacqueline L. ; Wilharm, Randall K. ; Gao, Zhe ; Pierre, Valerie C. ; Bischof, John C. ( May 2022 , Journal of Materials Chemistry B)

   New preservation technologies may allow for organ banking similar to blood and biomaterial banking approaches. Using cryoprotective agents (CPAs), aqueous solutions with organic components such as DMSO, propylene glycol, and added salts and sugars, organs can be used to vitrify and store organs at −140 °C. When needed, these organs can be rewarmed in a rapid and uniform manner if CPAs are supplemented with iron oxide nanoparticles (IONPs) in an applied radiofrequency field. Speed and uniformity of warming are both IONP concentration and CPA suspension dependent. Here we present a coating method of small molecule phosphonate linker (PLink) and biocompatible polymer ( i.e. polyethylene glycol PEG) that tunes stability and increases the maximum allowable concentration of IONPs in CPA suspension. PLink contains a phosphonate 'anchor' for high irreversible binding to iron oxide and a carboxylic acid 'handle' for ligand attachment. PLink-PEG removes and replaces the initial coating layer of commercially available IONPs (EMG1200 (hydrophobic) and EMG308 (hydrophilic) Ferrotec, Inc., increasing colloidal stability and decreasing aggregation in both water and CPAs, (verified with dynamic light scattering) from minutes (uncoated) to up to 6 days. Heating properties of EMG1200, specific absorption rate (SAR), measured using an applied field of 360 kHz andmore »20 kA m −1 , increased from 20 to 180 W per g Fe with increasing PLink-PEG5000. PEG replacing the initially hydrophobic coating decreased aggregation in water and CPA, consistent with earlier studies on heating performance. Furthermore, although the size is minimized at 0.20 mol PEG per g Fe, heating is not maximized until concentrations above 0.43 mol PEG per g Fe on EMG1200. SAR on hydrophilic EMG308 was preserved at 400 W per g Fe regardless of the amount of PLink added to the core. Herein concentrations of IONP in VS55 (common CPA) significantly above our previous capabilities, sIONP at 10 mg Fe per mL, was reached, 25 mg Fe per mL of 308-PEG5000 and 60 mg Fe per mL of 1200-PEG5000, approaching stock EMG308 in water, 60 mg Fe per mL. Furthermore, at these concentrations cryopreserved Human dermal fibroblast cells were successfully nanowarmed (at applied fields described above), with higher viability as compared to convective rewarming in a water bath and heating rate close to 200 °C min −1 , 2.5 times faster than our current system. Using PLink as the coating method allowed for higher concentrations of IONPs to be successfully suspended in CPA without affecting the heating ability. Additionally, the model ligand, PEG, allowed for increased stability over time in nanowarming experiments.« less