skip to main content
US FlagAn official website of the United States government
dot gov icon
Official websites use .gov
A .gov website belongs to an official government organization in the United States.
https lock icon
Secure .gov websites use HTTPS
A lock ( lock ) or https:// means you've safely connected to the .gov website. Share sensitive information only on official, secure websites.

Explore Research Products in the PAR
It may take a few hours for recently added research products to appear in PAR search results.


Title: Covariate Correcting Networks for Identifying Associations Between Socioeconomic Factors and Brain Outcomes in Children
Brain development in adolescence is synthetically influenced by various factors such as age, education, and socioeconomic conditions. To identify an independent effect from a variable of interest (e.g., socioeconomic conditions), statistical models such as General Linear Model (GLM) are typically adopted to account for covariates (e.g., age and gender). However, statistical models may be vulnerable with insufficient sample size and outliers, and multiple tests for a whole brain analysis lead to inevitable false-positives without sufficient sensitivity. Hence, it is necessary to develop a unified framework for multiple tests that robustly fits the observation and increases sensitivity. We therefore propose a unified flexible neural network that optimizes on the contribution from the main variable of interest as introduced in original GLM, which leads to improved statistical outcomes. The results on group analysis with fractional anisotropy (FA) from Diffusion Tensor Images from Adolescent Brain Cognitive Development (ABCD) study demonstrate that the proposed method provides much more selective and meaningful detection of ROIs related to socioeconomic status over conventional methods.  more » « less
Award ID(s):
2008602
PAR ID:
10349980
Author(s) / Creator(s):
; ; ;
Date Published:
Journal Name:
Medical Image Computing and Computer Assisted Intervention (MICCAI)
Format(s):
Medium: X
Sponsoring Org:
National Science Foundation
More Like this
  1. ; ; ; ; ; ; (, Land)
    null (Ed.)
    Agricultural systems are heterogeneous across temporal and spatial scales. Although much research has investigated farm size and economic output, the synergies and trade-offs across various agricultural and socioeconomic variables are unclear. This study applies a GIS-based approach to official Brazilian census data (Agricultural Censuses of 1995, 2006, and 2017) and surveys at the municipality level to (i) evaluate changes in the average soybean farm size across the country and (ii) compare agricultural and socioeconomic outcomes (i.e., soybean yield, agricultural production value, crop production diversity, and rural labor employment) relative to the average soybean farm size. Statistical tests (e.g., Kruskal–Wallis tests and Spearman’s correlation) were used to analyze variable outcomes in different classes of farm sizes and respective Agricultural Censuses. We found that agricultural and socioeconomic outcomes are spatially correlated with soybean farm size class. Therefore, based on the concepts of trade-offs and synergies, we show that municipalities with large soybean farm sizes had larger trade-offs (e.g., larger farm size was associated with lower crop diversity), while small and medium ones manifest greater synergies. These patterns are particularly strong for analysis using the Agricultural Census of 2017. Trade-off/synergy analysis across space and time is key for supporting long-term strategies aiming at alleviating unemployment and providing sustainable food production, essential to achieve the UN Sustainable Development Goals. 
    more » « less
  2. ; ; ; ; (, Human Brain Mapping)
    Abstract From birth to 5 years of age, brain structure matures and evolves alongside emerging cognitive and behavioral abilities. In relating concurrent cognitive functioning and measures of brain structure, a major challenge that has impeded prior investigation of their time‐dynamic relationships is the sparse and irregular nature of most longitudinal neuroimaging data. We demonstrate how this problem can be addressed by applying functional concurrent regression models (FCRMs) to longitudinal cognitive and neuroimaging data. The application of FCRM in neuroimaging is illustrated with longitudinal neuroimaging and cognitive data acquired from a large cohort (n= 210) of healthy children, 2–48 months of age. Quantifying white matter myelination by using myelin water fraction (MWF) as imaging metric derived from MRI scans, application of this methodology reveals an early period (200–500 days) during which whole brain and regional white matter structure, as quantified by MWF, is positively associated with cognitive ability, while we found no such association for whole brain white matter volume. Adjusting for baseline covariates including socioeconomic status as measured by maternal education (SES‐ME), infant feeding practice, gender, and birth weight further reveals an increasing association between SES‐ME and cognitive development with child age. These results shed new light on the emerging patterns of brain and cognitive development, indicating that FCRM provides a useful tool for investigating these evolving relationships. 
    more » « less
  3. ; (, Biometrika)
    We develop an omitted variable bias framework for sensitivity analysis of instrumental variable estimates that naturally handles multiple side effects (violations of the exclusion restriction assumption) and confounders (violations of the ignorability of the instrument assumption) of the instrument, exploits expert knowledge to bound sensitivity parameters and can be easily implemented with standard software. Specifically, we introduce sensitivity statistics for routine reporting, such as (extreme) robustness values for instrumental variables, describing the minimum strength that omitted variables need to have to change the conclusions of a study. Next, we provide visual displays that fully characterize the sensitivity of point estimates and confidence intervals to violations of the standard instrumental variable assumptions. Finally, we offer formal bounds on the worst possible bias under the assumption that the maximum explanatory power of omitted variables is no stronger than a multiple of the explanatory power of observed variables. Conveniently, many pivotal conclusions regarding the sensitivity of the instrumental variable estimate (e.g., tests against the null hypothesis of a zero causal effect) can be reached simply through separate sensitivity analyses of the effect of the instrument on the treatment (the first stage) and the effect of the instrument on the outcome (the reduced form). We apply our methods in a running example that uses proximity to college as an instrumental variable to estimate the returns to schooling. 
    more » « less
  4. ; ; ; (, The International Conference on Learning Representations)
    Modern recordings of neural activity provide diverse observations of neurons across brain areas, behavioral conditions, and subjects; presenting an exciting opportunity to reveal the fundamentals of brain-wide dynamics. Current analysis methods, however, often fail to fully harness the richness of such data, as they provide either uninterpretable representations (e.g., via deep networks) or oversimplify models (e.g., by assuming stationary dynamics or analyzing each session independently). Here, instead of regarding asynchronous neural recordings that lack alignment in neural identity or brain areas as a limitation, we leverage these diverse views into the brain to learn a unified model of neural dynamics. Specifically, we assume that brain activity is driven by multiple hidden global sub-circuits. These sub-circuits represent global basis interactions between neural ensembles—functional groups of neurons—such that the time-varying decomposition of these sub-circuits defines how the ensembles’ interactions evolve over time non-stationarily and non-linearly. We discover the neural ensembles underlying non-simultaneous observations, along with their non-stationary evolving interactions, with our new model, CREIMBO (Cross-Regional Ensemble Interactions in Multi-view Brain Observations). CREIMBO identifies the hidden composition of per-session neural ensembles through novel graph-driven dictionary learning and models the ensemble dynamics on a low-dimensional manifold spanned by a sparse time-varying composition of the global sub-circuits. Thus, CREIMBO disentangles overlapping temporal neural processes while preserving interpretability due to the use of a shared underlying sub-circuit basis. Moreover, CREIMBO distinguishes session-specific computations from global (session-invariant) ones by identifying session covariates and variations in sub-circuit activations. We demonstrate CREIMBO’s ability to recover true components in synthetic data, and uncover meaningful brain dynamics in human high-density electrode recordings, including cross-subject neural mechanisms as well as inter- vs. intra-region dynamical motifs. Furthermore, using mouse whole-brain recordings, we show CREIMBO’s ability to discover dynamical interactions that capture task and behavioral variables and meaningfully align with the biological importance of the brain areas they represent 
    more » « less
  5. ; ; ; ; ; (, Biophysical Journal)
    Multiple-particle tracking (MPT) is a microscopy technique capable of simultaneously tracking hundreds to thousands of nanoparticles in a biological sample and has been used extensively to characterize biological microenvironments, including the brain extracellular space (ECS). Machine learning techniques have been applied to MPT data sets to predict the diffusion mode of nanoparticle trajectories as well as more complex biological variables, such as biological age. In this study, we develop a machine learning pipeline to predict and investigate changes to the brain ECS due to injury using supervised classification and feature importance calculations. We first validate the pipeline on three related but distinct MPT data sets from the living brain ECS—age differences, region differences, and enzymatic degradation of ECS structure. We predict three ages with 86% accuracy, three regions with 90% accuracy, and healthy versus enzyme-treated tissue with 69% accuracy. Since injury across groups is normally compared with traditional statistical approaches, we first used linear mixed effects models to compare features between healthy control conditions and injury induced by two different oxygen glucose deprivation exposure times. We then used machine learning to predict injury state using MPT features. We show that the pipeline predicts between the healthy control, 0.5 h OGD treatment, and 1.5 h OGD treatment with 59% accuracy in the cortex and 66% in the striatum, and identifies nonlinear relationships between trajectory features that were not evident from traditional linear models. Our work demonstrates that machine learning applied to MPT data is effective across multiple experimental conditions and can find unique biologically relevant features of nanoparticle diffusion. 
    more » « less
  • Citation Formats
  • MLA
  • APA
  • Chicago
  • BibTeX
  • Save / Share this Record
  • Send to Email