Traditional knowledge, along with archaeological and linguistic evidence, documents that California supports cultural and linguistically diverse Indigenous populations. Studies that have included ancient genomes in this region, however, have focused primarily on broad-scale migration history of the North American continent, with relatively little attention to local population dynamics. Here, in a partnership involving researchers and the Muwekma Ohlone tribe, we analyze genomic data from ancient and present-day individuals from the San Francisco Bay Area in California: 12 ancient individuals dated to 1905 to 1826 and 601 to 184 calibrated years before the present (cal BP) from two archaeological sites and eight present-day members of the Muwekma Ohlone tribe, whose ancestral lands include these two sites. We find that when compared to other ancient and modern individuals throughout the Americas, the 12 ancient individuals from the San Francisco Bay Area cluster with ancient individuals from Southern California. At a finer scale of analysis, we find that the 12 ancient individuals from the San Francisco Bay Area have distinct ancestry from the other groups and that this ancestry has a component of continuity over time with the eight present-day Muwekma Ohlone individuals. These results add to our understanding of Indigenous population history in the San Francisco Bay Area, in California, and in western North America more broadly.
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Human Occupation of the North American Colorado Plateau ∼37,000 Years Ago
Calibrating human population dispersals across Earth’s surface is fundamental to assessing rates and timing of anthropogenic impacts and distinguishing ecological phenomena influenced by humans from those that were not. Here, we describe the Hartley mammoth locality, which dates to 38,900–36,250 cal BP by AMS 14 C analysis of hydroxyproline from bone collagen. We accept the standard view that elaborate stone technology of the Eurasian Upper Paleolithic was introduced into the Americas by arrival of the Native American clade ∼16,000 cal BP. It follows that if older cultural sites exist in the Americas, they might only be diagnosed using nuanced taphonomic approaches. We employed computed tomography (CT and μCT) and other state-of-the-art methods that had not previously been applied to investigating ancient American sites. This revealed multiple lines of taphonomic evidence suggesting that two mammoths were butchered using expedient lithic and bone technology, along with evidence diagnostic of controlled (domestic) fire. That this may be an ancient cultural site is corroborated by independent genetic evidence of two founding populations for humans in the Americas, which has already raised the possibility of a dispersal into the Americas by people of East Asian ancestry that preceded the Native American clade by millennia. The Hartley mammoth locality thus provides a new deep point of chronologic reference for occupation of the Americas and the attainment by humans of a near-global distribution.
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- Award ID(s):
- 1762458
- NSF-PAR ID:
- 10355989
- Date Published:
- Journal Name:
- Frontiers in Ecology and Evolution
- Volume:
- 10
- ISSN:
- 2296-701X
- Format(s):
- Medium: X
- Sponsoring Org:
- National Science Foundation
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Abstract The genetic prehistory of human populations in Central America is largely unexplored leaving an important gap in our knowledge of the global expansion of humans. We report genome-wide ancient DNA data for a transect of twenty individuals from two Belize rock-shelters dating between 9,600-3,700 calibrated radiocarbon years before present (cal. BP). The oldest individuals (9,600-7,300 cal. BP) descend from an Early Holocene Native American lineage with only distant relatedness to present-day Mesoamericans, including Mayan-speaking populations. After ~5,600 cal. BP a previously unknown human dispersal from the south made a major demographic impact on the region, contributing more than 50% of the ancestry of all later individuals. This new ancestry derived from a source related to present-day Chibchan speakers living from Costa Rica to Colombia. Its arrival corresponds to the first clear evidence for forest clearing and maize horticulture in what later became the Maya region.more » « less
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The Late-Holocene history of hydroclimatic variability in the Atacama Desert offers insights into the effects of precipitation and humans on ecosystems in one of the most extremely arid regions of the world. However, understanding the effects of regional precipitation variability in relation to local ecological stressors remains to be fully resolved. Here, we present a pollen-based qualitative precipitation reconstruction derived from fossil rodent middens recovered from two sites near Laguna Roja (LRO; n = 25) and Isluga (ISL; n = 15) in the Atacama highlands (19°S) of northern Chile. At LRO, the fossil pollen record shows multi-centennial hydroclimatic anomalies during the last millennium, with wetter than present phases at 1155–1130, 865–670, and 215–80 cal yrs BP, and similar to present conditions between 1005 and 880 cal yrs BP. In contrast, the ISL record shows a wet phase during 1115–840 cal yrs BP, suggesting that meso-ecological processes were as important in vegetation turnover as regional hydroclimate anomalies. Wetter conditions derived from LRO partially overlap with the Medieval Climate Anomaly (865–670 cal yrs BP) and with the latest part of the Little Ice Age (215–80 cal yrs BP). Furthermore, no strong anthropogenic signal was identified possibly related to the remote location of the records. Palynological diversity analyses evidence increasing diversification of plant communities during wet events at both sites. In correlation to existing regional hydroclimatic records from the Western Andes, our precipitation reconstruction verifies that centennial-scale changes in the strength of the South American Summer Monsoon (SASM) and partial influence of El Niño-like (ENSO) conditions drove vegetation turnover in the Atacama Desert during the last millennium.more » « less
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null (Ed.)The presence of well-documented sites in the Americas predating and south of the opening of an ice-free corridor in the North American ice sheets lends credence to a Pacific coastal migration theory (CMT) explaining the route for the initial peopling of the Americas. This theory has been informally discussed for more than 50 years, but until recently, has been largely ignored and never properly defined as a result. We provide a formal definition of the CMT which, briefly stated, is that Upper Paleolithic populations moved from Asia to coastal regions along the northwestern Pacific Rim between ~45-30 ka. By ~30 ka these coastal populations developed a mixed maritime, nearshore, and terrestrial adaptation involving the use of boats, shell fishhooks for deep-water fishing, and a stemmed point and macroblade core technology. About 25-24 ka a subset of these coastal populations became isolated somewhere in the vicinity of the Japan/Paleo-Hokkaido, Sahkalin, Kuril (PSHK) region, developing genetically into the ancient Native American (ANA) populations that eventually settled the Americas. Between ~22-16 ka these ANA people began migrating by foot and boat along the southern Beringian coast and down the Alaskan and Canadian coastline into the Americas south of the continental ice sheets before eventually expanding inland. We develop a series of testable hypotheses through which the CMT can be examined.more » « less
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Abstract Objectives This study aims to characterize the genetic histories of ancient hunter‐gatherer groups in Fuego‐Patagonia (Chile) with distinct Marine, Terrestrial, and Mixed Economy subsistence strategies. Mitochondrial (mtDNA) and Y‐chromosome data were generated to test three hypotheses. H0: All individuals were drawn from the same panmictic population; H1: Terrestrial groups first populated the region and gave rise to highly specialized Marine groups by ~7,500 cal BP; or H2: Marine and Terrestrial groups represent distinct ancestral lineages who migrated independently into the region.
Methods Ancient DNA was extracted from the teeth of 50 Fuegian‐Patagonian individuals dating from 6,895 cal BP to after European arrival, and analyzed alongside other individuals from previous studies. Individuals were assigned to Marine, Terrestrial, and Mixed Economy groups based on archeological context and stable isotope diet inferences, and mtDNA (HVR1/2) and Y‐chromosome variation was analyzed.
Results Endogenous aDNA was obtained from 49/50 (98%) individuals. Haplotype diversities, FSTcomparisons, and exact tests of population differentiation showed that Marine groups were significantly different from Terrestrial groups based on mtDNA (
p < 0.05). No statistically significant differences were found between Terrestrial and Mixed Economy groups. Demographic simulations support models in which Marine groups diverged from the others by ~14,000 cal BP. Y‐chromosome results showed similar patterns but were not statistically significant due to small sample sizes and allelic dropout.Discussion These results support the hypothesis that Marine and Terrestrial economic groups represent distinct ancestral lineages who diverged during the time populations were expanding in the Americas, and may represent independent migrations into Fuego‐Patagonia.
- Free Publicly Accessible Full Text
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Accepted Manuscript1.0
- Journal Article:
- https://doi.org/10.3389/fevo.2022.903795
