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1. Toward Autonomous Detection of Anomalous GNSS Data Via Applied Unsupervised Artificial Intelligence

   https://doi.org/10.1142/S1793351X22400025  

   Dye, Mike ; Stamps, D. Sarah ; Mason, Myles ; Saria, Elifuraha ( March 2022 , International Journal of Semantic Computing)

   Artificial intelligence applications within the geosciences are becoming increasingly common, yet there are still many challenges involved in adapting established techniques to geoscience data sets. Applications in the realm of volcanic hazards assessment show great promise for addressing such challenges. Here, we describe a Jupyter Notebook we developed that ingests real-time Global Navigation Satellite System (GNSS) data streams from the EarthCube CHORDS (Cloud-Hosted Real-time Data Services for the geosciences) portal TZVOLCANO, applies unsupervised learning algorithms to perform automated data quality control (“noise reduction”), and explores autonomous detection of unusual volcanic activity using a neural network. The TZVOLCANO CHORDS portal streams real-time GNSS positioning data in 1[Formula: see text]s intervals from the TZVOLCANO network, which monitors the active volcano Ol Doinyo Lengai in Tanzania, through UNAVCO’s real-time GNSS data services. UNAVCO’s real-time data services provide near-real-time positions processed by the Trimble Pivot system. The positioning data (latitude, longitude and height) are imported into the Jupyter Notebook presented in this paper in user-defined time spans. The positioning data are then collected in sets by the Jupyter Notebook and processed to extract a useful calculated variable in preparation for the machine learning algorithms, of which we choose the vector magnitude for further processing. Unsupervised K-means and Gaussian Mixture machine learning algorithms are then utilized to locate and remove data points (“filter”) that are likely caused by noise and unrelated to volcanic signals. We find that both the K-means and Gaussian Mixture machine learning algorithms perform well at identifying regions of high noise within tested GNSS data sets. The filtered data are then used to train an artificial intelligence neural network that predicts volcanic deformation. Our Jupyter Notebook has promise to be used for detecting potentially hazardous volcanic activity in the form of rapid vertical or horizontal displacement of the Earth’s surface. 

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2. A Deep Learning-Based Real-time Seizure Detection System

   https://doi.org/10.1109/SPMB50085.2020.9353623  

   Shawki, N. ; Elseify, T. ; Cap, T. ; Shah, V. ; Obeid, I. ; Picone, J. ( December 2020 , Proceedings of the IEEE Signal Processing in Medicine and Biology Symposium (SPMB))

   Obeid, Iyad Selesnick (Ed.)

   Electroencephalography (EEG) is a popular clinical monitoring tool used for diagnosing brain-related disorders such as epilepsy [1]. As monitoring EEGs in a critical-care setting is an expensive and tedious task, there is a great interest in developing real-time EEG monitoring tools to improve patient care quality and efficiency [2]. However, clinicians require automatic seizure detection tools that provide decisions with at least 75% sensitivity and less than 1 false alarm (FA) per 24 hours [3]. Some commercial tools recently claim to reach such performance levels, including the Olympic Brainz Monitor [4] and Persyst 14 [5]. In this abstract, we describe our efforts to transform a high-performance offline seizure detection system [3] into a low latency real-time or online seizure detection system. An overview of the system is shown in Figure 1. The main difference between an online versus offline system is that an online system should always be causal and has minimum latency which is often defined by domain experts. The offline system, shown in Figure 2, uses two phases of deep learning models with postprocessing [3]. The channel-based long short term memory (LSTM) model (Phase 1 or P1) processes linear frequency cepstral coefficients (LFCC) [6] features from each EEG channel separately. We use the hypotheses generated by the P1 model and create additional features that carry information about the detected events and their confidence. The P2 model uses these additional features and the LFCC features to learn the temporal and spatial aspects of the EEG signals using a hybrid convolutional neural network (CNN) and LSTM model. Finally, Phase 3 aggregates the results from both P1 and P2 before applying a final postprocessing step. The online system implements Phase 1 by taking advantage of the Linux piping mechanism, multithreading techniques, and multi-core processors. To convert Phase 1 into an online system, we divide the system into five major modules: signal preprocessor, feature extractor, event decoder, postprocessor, and visualizer. The system reads 0.1-second frames from each EEG channel and sends them to the feature extractor and the visualizer. The feature extractor generates LFCC features in real time from the streaming EEG signal. Next, the system computes seizure and background probabilities using a channel-based LSTM model and applies a postprocessor to aggregate the detected events across channels. The system then displays the EEG signal and the decisions simultaneously using a visualization module. The online system uses C++, Python, TensorFlow, and PyQtGraph in its implementation. The online system accepts streamed EEG data sampled at 250 Hz as input. The system begins processing the EEG signal by applying a TCP montage [8]. Depending on the type of the montage, the EEG signal can have either 22 or 20 channels. To enable the online operation, we send 0.1-second (25 samples) length frames from each channel of the streamed EEG signal to the feature extractor and the visualizer. Feature extraction is performed sequentially on each channel. The signal preprocessor writes the sample frames into two streams to facilitate these modules. In the first stream, the feature extractor receives the signals using stdin. In parallel, as a second stream, the visualizer shares a user-defined file with the signal preprocessor. This user-defined file holds raw signal information as a buffer for the visualizer. The signal preprocessor writes into the file while the visualizer reads from it. Reading and writing into the same file poses a challenge. The visualizer can start reading while the signal preprocessor is writing into it. To resolve this issue, we utilize a file locking mechanism in the signal preprocessor and visualizer. Each of the processes temporarily locks the file, performs its operation, releases the lock, and tries to obtain the lock after a waiting period. The file locking mechanism ensures that only one process can access the file by prohibiting other processes from reading or writing while one process is modifying the file [9]. The feature extractor uses circular buffers to save 0.3 seconds or 75 samples from each channel for extracting 0.2-second or 50-sample long center-aligned windows. The module generates 8 absolute LFCC features where the zeroth cepstral coefficient is replaced by a temporal domain energy term. For extracting the rest of the features, three pipelines are used. The differential energy feature is calculated in a 0.9-second absolute feature window with a frame size of 0.1 seconds. The difference between the maximum and minimum temporal energy terms is calculated in this range. Then, the first derivative or the delta features are calculated using another 0.9-second window. Finally, the second derivative or delta-delta features are calculated using a 0.3-second window [6]. The differential energy for the delta-delta features is not included. In total, we extract 26 features from the raw sample windows which add 1.1 seconds of delay to the system. We used the Temple University Hospital Seizure Database (TUSZ) v1.2.1 for developing the online system [10]. The statistics for this dataset are shown in Table 1. A channel-based LSTM model was trained using the features derived from the train set using the online feature extractor module. A window-based normalization technique was applied to those features. In the offline model, we scale features by normalizing using the maximum absolute value of a channel [11] before applying a sliding window approach. Since the online system has access to a limited amount of data, we normalize based on the observed window. The model uses the feature vectors with a frame size of 1 second and a window size of 7 seconds. We evaluated the model using the offline P1 postprocessor to determine the efficacy of the delayed features and the window-based normalization technique. As shown by the results of experiments 1 and 4 in Table 2, these changes give us a comparable performance to the offline model. The online event decoder module utilizes this trained model for computing probabilities for the seizure and background classes. These posteriors are then postprocessed to remove spurious detections. The online postprocessor receives and saves 8 seconds of class posteriors in a buffer for further processing. It applies multiple heuristic filters (e.g., probability threshold) to make an overall decision by combining events across the channels. These filters evaluate the average confidence, the duration of a seizure, and the channels where the seizures were observed. The postprocessor delivers the label and confidence to the visualizer. The visualizer starts to display the signal as soon as it gets access to the signal file, as shown in Figure 1 using the “Signal File” and “Visualizer” blocks. Once the visualizer receives the label and confidence for the latest epoch from the postprocessor, it overlays the decision and color codes that epoch. The visualizer uses red for seizure with the label SEIZ and green for the background class with the label BCKG. Once the streaming finishes, the system saves three files: a signal file in which the sample frames are saved in the order they were streamed, a time segmented event (TSE) file with the overall decisions and confidences, and a hypotheses (HYP) file that saves the label and confidence for each epoch. The user can plot the signal and decisions using the signal and HYP files with only the visualizer by enabling appropriate options. For comparing the performance of different stages of development, we used the test set of TUSZ v1.2.1 database. It contains 1015 EEG records of varying duration. The any-overlap performance [12] of the overall system shown in Figure 2 is 40.29% sensitivity with 5.77 FAs per 24 hours. For comparison, the previous state-of-the-art model developed on this database performed at 30.71% sensitivity with 6.77 FAs per 24 hours [3]. The individual performances of the deep learning phases are as follows: Phase 1’s (P1) performance is 39.46% sensitivity and 11.62 FAs per 24 hours, and Phase 2 detects seizures with 41.16% sensitivity and 11.69 FAs per 24 hours. We trained an LSTM model with the delayed features and the window-based normalization technique for developing the online system. Using the offline decoder and postprocessor, the model performed at 36.23% sensitivity with 9.52 FAs per 24 hours. The trained model was then evaluated with the online modules. The current performance of the overall online system is 45.80% sensitivity with 28.14 FAs per 24 hours. Table 2 summarizes the performances of these systems. The performance of the online system deviates from the offline P1 model because the online postprocessor fails to combine the events as the seizure probability fluctuates during an event. The modules in the online system add a total of 11.1 seconds of delay for processing each second of the data, as shown in Figure 3. In practice, we also count the time for loading the model and starting the visualizer block. When we consider these facts, the system consumes 15 seconds to display the first hypothesis. The system detects seizure onsets with an average latency of 15 seconds. Implementing an automatic seizure detection model in real time is not trivial. We used a variety of techniques such as the file locking mechanism, multithreading, circular buffers, real-time event decoding, and signal-decision plotting to realize the system. A video demonstrating the system is available at: https://www.isip.piconepress.com/projects/nsf_pfi_tt/resources/videos/realtime_eeg_analysis/v2.5.1/video_2.5.1.mp4. The final conference submission will include a more detailed analysis of the online performance of each module. ACKNOWLEDGMENTS Research reported in this publication was most recently supported by the National Science Foundation Partnership for Innovation award number IIP-1827565 and the Pennsylvania Commonwealth Universal Research Enhancement Program (PA CURE). Any opinions, findings, and conclusions or recommendations expressed in this material are those of the author(s) and do not necessarily reflect the official views of any of these organizations. REFERENCES [1] A. Craik, Y. He, and J. L. Contreras-Vidal, “Deep learning for electroencephalogram (EEG) classification tasks: a review,” J. Neural Eng., vol. 16, no. 3, p. 031001, 2019. https://doi.org/10.1088/1741-2552/ab0ab5. [2] A. C. Bridi, T. Q. Louro, and R. C. L. Da Silva, “Clinical Alarms in intensive care: implications of alarm fatigue for the safety of patients,” Rev. Lat. Am. Enfermagem, vol. 22, no. 6, p. 1034, 2014. https://doi.org/10.1590/0104-1169.3488.2513. [3] M. Golmohammadi, V. Shah, I. Obeid, and J. Picone, “Deep Learning Approaches for Automatic Seizure Detection from Scalp Electroencephalograms,” in Signal Processing in Medicine and Biology: Emerging Trends in Research and Applications, 1st ed., I. Obeid, I. Selesnick, and J. Picone, Eds. New York, New York, USA: Springer, 2020, pp. 233–274. https://doi.org/10.1007/978-3-030-36844-9_8. [4] “CFM Olympic Brainz Monitor.” [Online]. Available: https://newborncare.natus.com/products-services/newborn-care-products/newborn-brain-injury/cfm-olympic-brainz-monitor. [Accessed: 17-Jul-2020]. [5] M. L. Scheuer, S. B. Wilson, A. Antony, G. Ghearing, A. Urban, and A. I. Bagic, “Seizure Detection: Interreader Agreement and Detection Algorithm Assessments Using a Large Dataset,” J. Clin. Neurophysiol., 2020. https://doi.org/10.1097/WNP.0000000000000709. [6] A. Harati, M. Golmohammadi, S. Lopez, I. Obeid, and J. Picone, “Improved EEG Event Classification Using Differential Energy,” in Proceedings of the IEEE Signal Processing in Medicine and Biology Symposium, 2015, pp. 1–4. https://doi.org/10.1109/SPMB.2015.7405421. [7] V. Shah, C. Campbell, I. Obeid, and J. Picone, “Improved Spatio-Temporal Modeling in Automated Seizure Detection using Channel-Dependent Posteriors,” Neurocomputing, 2021. [8] W. Tatum, A. Husain, S. Benbadis, and P. Kaplan, Handbook of EEG Interpretation. New York City, New York, USA: Demos Medical Publishing, 2007. [9] D. P. Bovet and C. Marco, Understanding the Linux Kernel, 3rd ed. O’Reilly Media, Inc., 2005. https://www.oreilly.com/library/view/understanding-the-linux/0596005652/. [10] V. Shah et al., “The Temple University Hospital Seizure Detection Corpus,” Front. Neuroinform., vol. 12, pp. 1–6, 2018. https://doi.org/10.3389/fninf.2018.00083. [11] F. Pedregosa et al., “Scikit-learn: Machine Learning in Python,” J. Mach. Learn. Res., vol. 12, pp. 2825–2830, 2011. https://dl.acm.org/doi/10.5555/1953048.2078195. [12] J. Gotman, D. Flanagan, J. Zhang, and B. Rosenblatt, “Automatic seizure detection in the newborn: Methods and initial evaluation,” Electroencephalogr. Clin. Neurophysiol., vol. 103, no. 3, pp. 356–362, 1997. https://doi.org/10.1016/S0013-4694(97)00003-9. 

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3. Ecohydrological modelling in a deciduous boreal forest: Model evaluation for application in non‐stationary climates

   https://doi.org/10.1002/hyp.14251  

   Marshall, Adrienne M. ; Link, Timothy E. ; Flerchinger, Gerald N. ; Nicolsky, Dmitry J. ; Lucash, Melissa S. ( June 2021 , Hydrological Processes)

   Soil moisture is an important driver of growth in boreal Alaska, but estimating soil hydraulic parameters can be challenging in this data‐sparse region. Parameter estimation is further complicated in regions with rapidly warming climate, where there is a need to minimize model error dependence on interannual climate variations. To better identify soil hydraulic parameters and quantify energy and water balance and soil moisture dynamics, we applied the physically based, one‐dimensional ecohydrological Simultaneous Heat and Water (SHAW) model, loosely coupled with the Geophysical Institute of Permafrost Laboratory (GIPL) model, to an upland deciduous forest stand in interior Alaska over a 13‐year period. Using a Generalized Likelihood Uncertainty Estimation parameterisation, SHAW reproduced interannual and vertical spatial variability of soil moisture during a five‐year validation period quite well, with root mean squared error (RMSE) of volumetric water content at 0.5 m as low as 0.020 cm³/cm³. Many parameter sets reproduced reasonable soil moisture dynamics, suggesting considerable equifinality. Model performance generally declined in the eight‐year validation period, indicating some overfitting and demonstrating the importance of interannual variability in model evaluation. We compared the performance of parameter sets selected based on traditional performance measures such as the RMSE that minimize error in soil moisture simulation, with one that is designed to minimize the dependence of model error on interannual climate variability using a new diagnostic approach we call CSMP, which stands for Climate Sensitivity of Model Performance. Use of the CSMP approach moderately decreases traditional model performance but may be more suitable for climate change applications, for which it is important that model error is independent from climate variability. These findings illustrate (1) that the SHAW model, coupled with GIPL, can adequately simulate soil moisture dynamics in this boreal deciduous region, (2) the importance of interannual variability in model parameterisation, and (3) a novel objective function for parameter selection to improve applicability in non‐stationary climates.

    

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4. Robust Filtering Techniques for RTK Positioning in Harsh Propagation Environments

   https://doi.org/10.3390/s21041250  

   Medina, Daniel ; Li, Haoqing ; Vilà-Valls, Jordi ; Closas, Pau ( February 2021 , Sensors)

   null (Ed.)

   Global navigation satellite systems (GNSSs) play a key role in intelligent transportation systems such as autonomous driving or unmanned systems navigation. In such applications, it is fundamental to ensure a reliable precise positioning solution able to operate in harsh propagation conditions such as urban environments and under multipath and other disturbances. Exploiting carrier phase observations allows for precise positioning solutions at the complexity cost of resolving integer phase ambiguities, a procedure that is particularly affected by non-nominal conditions. This limits the applicability of conventional filtering techniques in challenging scenarios, and new robust solutions must be accounted for. This contribution deals with real-time kinematic (RTK) positioning and the design of robust filtering solutions for the associated mixed integer- and real-valued estimation problem. Families of Kalman filter (KF) approaches based on robust statistics and variational inference are explored, such as the generalized M-based KF or the variational-based KF, aiming to mitigate the impact of outliers or non-nominal measurement behaviors. The performance assessment under harsh propagation conditions is realized using a simulated scenario and real data from a measurement campaign. The proposed robust filtering solutions are shown to offer excellent resilience against outlying observations, with the variational-based KF showcasing the overall best performance in terms of Gaussian efficiency and robustness. 

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5. M icro P rof : Code-level Attribution of Unnecessary Data Transfer in Microservice Applications

   https://doi.org/10.1145/3622787  

   Tariq, Syed Salauddin ; Menard, Lance ; Su, Pengfei ; Roy, Probir ( September 2023 , ACM Transactions on Architecture and Code Optimization)

   The microservice architecture style has gained popularity due to its ability to fault isolation, ease of scaling applications, and developer’s agility. However, writing applications in the microservice design style has its challenges. Due to the loosely coupled nature, services communicate with others through standard communication APIs. This incurs significant overhead in the application due to communication protocol and data transformation. An inefficient service communication at the microservice application logic can further overwhelm the application. We perform a grey literature review showing that unnecessary data transfer is a real challenge in the industry. To the best of our knowledge, no effective tool is currently available to accurately identify the origins of unnecessary microservice communications that lead to significant performance overhead and provide guidance for optimization. To bridge the knowledge gap, we propose MicroProf, a dynamic program analysis tool to detect unnecessary data transfer in Java-based microservice applications. At the implementation level, MicroProfproposes novel techniques such as remote object sampling and hardware debug registers to monitor remote object usage. MicroProfreports the unnecessary data transfer at the application source code level. Furthermore, MicroProfpinpoints the opportunities for communication API optimization. MicroProfis evaluated on four well-known applications involving two real-world applications and two benchmarks, identifying five inefficient remote invocations. Guided by MicroProf, API optimization achieves an 87.5% reduction in the number of fields within REST API responses. The empirical evaluation further reveals that the optimized services experience a speedup of up to 4.59 ×.

    

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