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1. Wild and domestic savanna herbivores increase smaller vertebrate diversity, but less than additively

   https://doi.org/10.1111/1365-2664.13843  

   Wells, Harry B. M.; Kimuyu, Duncan M.; Odadi, Wilfred O.; Dougill, Andrew J.; Stringer, Lindsay C.; Young, Truman P.; du Toit, ed., Johan (February 2021, Journal of Applied Ecology)

   Abstract Cattle and other livestock graze more than a quarter of the world's terrestrial area and are widely regarded to be drivers of global biodiversity declines. Studies often compare the effects of livestock presence/absence but, to our knowledge, no studies have tested for interactive effects between large wild herbivores and livestock at varying stocking rates on small‐bodied wild vertebrates.We investigated the effects of cattle stocking rates (none/moderate/high) on the diversity of wildlife 0.05–1,000 kg using camera traps at a long‐term exclosure experiment within a semi‐arid savanna ecosystem in central Kenya. In addition, by selectively excluding wild ‘mesoherbivores’ (50–1,000 kg) and ‘megaherbivores’ (>1,000 kg; elephant and giraffe), we tested whether the presence of these two wild herbivore guilds (collectively, ‘larger wild herbivores’) mediates the effect of cattle stocking rate on habitat use and diversity of ‘smaller wildlife’ (mammals ranging between 10 and 70 cm shoulder height and birds).Our results show that cattle enhance alpha diversity of smaller wildlife (with or without larger wild herbivore presence) and of all wildlife 0.05–1,000 kg (with or without megaherbivore presence), by altering vegetation structure. However, for smaller wildlife, this effect is less pronounced in the presence of larger wild herbivores, which also shorten grass. In the absence of cattle, mesoherbivore‐accessible sites showed higher alpha diversity of smaller wildlife than sites excluding mesoherbivores.Smaller wildlife habitat use was increased by high cattle stocking rates and wild mesoherbivores more in the presence of the other.Synthesis and applications. Our findings imply that grazing, whether by livestock or wildlife, can enhance local savanna wildlife diversity. The biodiversity benefits of localised increases in herbivory are likely to be due to shortened grass and associated visibility improvements (for predator avoidance/foraging). This suggests that land managers can increase local biodiversity by shortening grass, with wild or domestic herbivores (or both), at least in patches within a taller grass matrix. 

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2. Less Is More: Lowering Cattle Stocking Rates Enhances Wild Herbivore Habitat Use and Cattle Foraging Efficiency

   https://doi.org/10.3389/fevo.2022.825689  

   Wells, Harry B.; Crego, Ramiro D.; Ekadeli, Jackson; Namoni, Mathew; Kimuyu, Duncan M.; Odadi, Wilfred O.; Porensky, Lauren M.; Dougill, Andrew J.; Stringer, Lindsay C.; Young, Truman P. (February 2022, Frontiers in Ecology and Evolution)

   Over a quarter of the world’s land surface is grazed by cattle and other livestock, which are replacing wild herbivores and widely regarded as drivers of global biodiversity declines. The effects of livestock presence versus absence on wild herbivores are well documented. However, the environmental context-specific effects of cattle stocking rate on biodiversity and livestock production are poorly understood, precluding nuanced rangeland management recommendations. To address this, we used a long term exclosure experiment in a semi-arid savanna ecosystem in central Kenya that selectively excludes cattle (at different stocking rates), wild mesoherbivores, and megaherbivores. We investigated the individual and interactive effects of cattle stocking rate (zero/moderate/high) and megaherbivore (>1,000 kg) accessibility on habitat use (measured as dung density) by two dominant wild mesoherbivores (50–1,000 kg; zebra Equus quagga and eland Taurotragus oryx ) across the “wet” and “dry” seasons. To explore potential tradeoffs or co-benefits between cattle production and wildlife conservation, we tested for individual and interactive effects of cattle stocking rate and accessibility by wild mesoherbivores and megaherbivores (collectively, large wild herbivores) on the foraging efficiency of cattle across both seasons. Eland habitat use was reduced by cattle at moderate and high stocking rates across both dry and wet seasons and regardless of megaherbivore accessibility. We observed a positive effect of megaherbivores on zebra habitat use at moderate, but not high, stocking rates. Cattle foraging efficiency (g dry matter step –1 min –1 ) was lower in the high compared to moderate stocking rate treatments during the dry season, and was non-additively reduced by wild mesoherbivores and high cattle stocking rates during the wet season. These results show that high stocking rates are detrimental to wild mesoherbivore habitat use and cattle foraging efficiency, while reducing to moderate stocking rates can benefit zebra habitat use and cattle foraging efficiency. Our findings demonstrate that ecosystem management and restoration efforts across African rangelands that involve reducing cattle stocking rates may represent a win-win for wild herbivore conservation and individual performance of livestock. 

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3. Wild herbivores enhance resistance to invasion by exotic cacti in an African savanna

   https://doi.org/10.1111/1365-2745.14010  

   Wells, Harry B. M.; Crego, Ramiro D.; Alston, Jesse M.; Ndung'u, S. Kimani; Khasoha, Leo M.; Reed, Courtney G.; Hassan, Abdikadir A.; Kurukura, Samson; Ekadeli, Jackson; Namoni, Mathew; et al (October 2022, Journal of Ecology)

   Abstract Whether wild herbivores confer biotic resistance to invasion by exotic plants remains a key question in ecology. There is evidence that wild herbivores can impede invasion by exotic plants, but it is unclear whether and how this generalises across ecosystems with varying wild herbivore diversity and functional groups of plants, particularly over long‐term (decadal) time frames.Using data from three long‐term (13‐ to 26‐year) exclosure experiments in central Kenya, we tested the effects of wild herbivores on the density of exotic invasive cacti,Opuntia strictaandO. ficus‐indica(collectively,Opuntia), which are among the worst invasive species globally. We also examined relationships between wild herbivore richness and elephant occurrence probability with the probability ofO. strictapresence at the landscape level (6150 km²).Opuntiadensities were 74% to 99% lower in almost all plots accessible to wild herbivores compared to exclosure plots.Opuntiadensities also increased more rapidly across time in plots excluding wild herbivores. These effects were largely driven by megaherbivores (≥1000 kg), particularly elephants.At the landscape level, modelledOpuntia strictaoccurrence probability was negatively correlated with estimated species richness of wild herbivores and elephant occurrence probability. On average,O. strictaoccurrence probability fell from ~0.56 to ~0.45 as wild herbivore richness increased from 6 to 10 species and fell from ~0.57 to ~0.40 as elephant occurrence probability increased from ~0.41 to ~0.84. These multi‐scale results suggest that any facilitative effects ofOpuntiaby wild herbivores (e.g. seed/vegetative dispersal) are overridden by suppression (e.g. consumption, uprooting, trampling).Synthesis. Our experimental and observational findings that wild herbivores confer resistance to invasion by exotic cacti add to evidence that conserving and restoring native herbivore assemblages (particularly megaherbivores) can increase community resistance to plant invasions. 

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4. Identifying direct and indirect associations among traits by merging phylogenetic comparative methods and structural equation models

   https://doi.org/10.1111/2041-210X.14076  

   Thorson, James T.; Maureaud, Aurore A.; Frelat, Romain; Mérigot, Bastien; Bigman, Jennifer S.; Friedman, Sarah T.; Palomares, Maria Lourdes D.; Pinsky, Malin L.; Price, Samantha A.; Wainwright, Peter (March 2023, Methods in Ecology and Evolution)

   Abstract Traits underlie organismal responses to their environment and are essential to predict community responses to environmental conditions under global change. Species differ in life‐history traits, morphometrics, diet type, reproductive characteristics and habitat utilization.Trait associations are widely analysed using phylogenetic comparative methods (PCM) to account for correlations among related species. Similarly, traits are measured for some but not all species, and missing continuous traits (e.g. growth rate) can be imputed using ‘phylogenetic trait imputation’ (PTI), based on evolutionary relatedness and trait covariance. However, PTI has not been available for categorical traits, and estimating covariance among traits without ecological constraints risks inferring implausible evolutionary mechanisms.Here, we extend previous PCM and PTI methods by (1) specifying covariance among traits as a structural equation model (SEM), and (2) incorporating associations among both continuous and categorical traits. Fitting a SEM replaces the covariance among traits with a set of linear path coefficients specifying potential evolutionary mechanisms. Estimated parameters then represent regression slopes (i.e. the average change in trait Y given an exogenous change in trait X) that can be used to calculate both direct effects (X impacts Y) and indirect effects (X impacts Z and Z impacts Y).We demonstrate phylogenetic structural‐equation mixed‐trait imputation using 33 variables representing life history, reproductive, morphological, and behavioural traits for all >32,000 described fishes worldwide. SEM coefficients suggest that one degree Celsius increase in habitat is associated with an average 3.5% increase in natural mortality (including a 1.4% indirect impact that acts via temperature effects on the growth coefficient), and an average 3.0% decrease in fecundity (via indirect impacts on maximum age and length). Cross‐validation indicates that the model explains 54%–89% of variance for withheld measurements of continuous traits and has an area under the receiver‐operator‐characteristics curve of 0.86–0.99 for categorical traits.We use imputed traits to classify all fishes into life‐history types, and confirm a phylogenetic signal in three dominant life‐history strategies in fishes. PTI using phylogenetic SEMs ensures that estimated parameters are interpretable as regression slopes, such that the inferred evolutionary relationships can be compared with long‐term evolutionary and rearing experiments. 

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5. Wildfire alters the disturbance impacts of an emerging forest disease via changes to host occurrence and demographic structure

   https://doi.org/10.1111/1365-2745.13495  

   Simler‐Williamson, Allison B.; Metz, Margaret R.; Frangioso, Kerri M.; Rizzo, David M.; Thrall, ed., Peter (September 2020, Journal of Ecology)

   Abstract Anthropogenic activities have altered historical disturbance regimes, and understanding the mechanisms by which these shifting perturbations interact is essential to predicting where they may erode ecosystem resilience. Emerging infectious plant diseases, caused by human translocation of nonnative pathogens, can generate ecologically damaging forms of novel biotic disturbance. Further, abiotic disturbances, such as wildfire, may influence the severity and extent of disease‐related perturbations via their effects on the occurrence of hosts, pathogens and microclimates; however, these interactions have rarely been examined.The disease ‘sudden oak death’ (SOD), associated with the introduced pathogenPhytophthora ramorum, causes acute, landscape‐scale tree mortality in California's fire‐prone coastal forests. Here, we examined interactions between wildfire and the biotic disturbance impacts of this emerging infectious disease. Leveraging long‐term datasets that describe wildfire occurrence andP. ramorumdynamics across the Big Sur region, we modelled the influence of recent and historical fires on epidemiological parameters, including pathogen presence, infestation intensity, reinvasion, and host mortality.Past wildfire altered disease dynamics and reduced SOD‐related mortality, indicating a negative interaction between these abiotic and biotic disturbances. Frequently burned forests were less likely to be invaded byP. ramorum, had lower incidence of host infection, and exhibited decreased disease‐related biotic disturbance, which was associated with reduced occurrence and density of epidemiologically significant hosts. Following a recent wildfire, survival of mature bay laurel, a key sporulating host, was the primary driver ofP. ramoruminfestation and reinvasion, but younger, rapidly regenerating host vegetation capable of sporulation did not measurably influence disease dynamics. Notably, the effect ofP. ramoruminfection on host mortality was reduced in recently burned areas, indicating that the loss of tall, mature host canopies may temporarily dampen pathogen transmission and ‘release’ susceptible species from significant inoculum pressure.Synthesis. Cumulatively, our findings indicate that fire history has contributed to heterogeneous patterns of biotic disturbance and disease‐related decline across this landscape, via changes to the both the occurrence of available hosts and the demography of epidemiologically important host populations. These results highlight that human‐altered abiotic disturbances may play a foundational role in structuring infectious disease dynamics, contributing to future outbreak emergence and driving biotic disturbance regimes. 

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