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1. A Global Perspective on Iron and Plankton Through the Tara Oceans Lens

   https://doi.org/10.1029/2019GB006181  

   Marchetti, Adrian (March 2019, Global Biogeochemical Cycles)

   Abstract The Tara Oceans program has delivered major advances in our knowledge of ocean plankton diversity and complexity, shedding light on key interactions that explain their success on a planetary scale. In this issue, Caputi et al. (2019,https://doi.org/10.1029/2018GB006022) further contribute to this knowledge through combining comprehensive bio‐oceanographic genomic and transcriptomic Tara Oceans data sets with iron distributions derived from two global‐scale biogeochemical models. Their findings reveal the prevalence of iron as a limiting nutrient in pelagic ecosystems at both local and global scales, exerting a considerable force that drives plankton evolution and shapes community structure. Integration of omics data (i.e., genomics, transcriptomics, proteomics, and metabolomics) with oceanographic properties and biogeochemical models will transform our view of the ocean ecosystem and its role on a changing planet. 

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2. Marine Population Genomics: Challenges and Opportunities

   https://doi.org/10.1007/13836_2019_70  

   Oleksiak, M.F.; Rajora, O.P. (January 2020, Population Genomics: Marine Organisms)

   Population genomics has provided unprecedented opportunities to unravel the mysteries of marine organisms in the oceans' depths. The world's oceans, which make up 70% of our planet, encompass diverse habitats and host numerous unexplored populations and species. Population genomics studies of marine organisms are rapidly emerging and have the potential to transform our understanding of marine populations, species, and ecosystems, providing insights into how these organisms are evolving and how they respond to different stimuli and environments. This knowledge is critical for understanding the fundamental aspects of marine life, how marine organisms will respond to environmental changes, and how we can better protect and preserve marine biodiversity and resources. This book brings together leading experts in the field to address critical aspects of fundamental and applied research in marine species and share their research and insights crucial for understanding marine ecosystem diversity and function. It also discusses the challenges, opportunities and future perspectives of marine population genomics. 

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3. Adaptation Without Boundaries: Population Genomics in Marine Systems

   https://doi.org/https://doi.org/10.1007/13836_2018_32  

   Oleksiak, M. F. (January 2020, Population Genomics)

   From the surface, the world’s oceans appear vast and boundless. Ocean currents, which can transport marine organisms thousands of kilometers, coupled with species that spend some or all of their life in the pelagic zone, the open sea, highlight the potential for well-mixed, panmictic marine populations. Yet these ocean habitats do harbor boundaries. In this largely three-dimensional marine environment, gradients form boundaries. These gradients include temperature, salinity, and oxygen gradients. Ocean currents also form boundaries between neighboring water masses even as they can break through barriers by transporting organisms huge distances. With the advent of next-generation sequencing approaches, which allow us to easily generate a large number of genomic markers, we are in an unprecedented position to study the effects of these potential oceanic boundaries and can ask how often and when do locally adapted marine populations evolve. This knowledge will inform our understanding of how marine organisms respond to climate change and affect how we protect marine diversity. In this chapter I first discuss the major boundaries present in the marine environment and the implications they have for marine organisms. Next, I discuss the how genomic approaches are impacting our understanding of genetic connectivity, ocean fisheries, and local adaptation, including the potential for epigenetic adaptation. I conclude with considerations for marine conservation and management and future prospects. 

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4. Pan-Arctic Phylogeography of the Pelagic Chaetognath Eukrohnia hamata

   Passacantando, M; Questel, J; Bucklin, A (February 2018, Ocean Sciences Meeting)

   Chaetognatha are highly-effective predatory components of the marine planktonic assemblages. Many species exhibit disjunct biogeographical distributions throughout the global ocean, and thus serve as sentinel species for examining climate-driven changes in ocean circulation on zooplankton species, communities, and food webs. Of particular interest are ecological changes in the Arctic, a region being drastically affected by climate change. In this study, a 650 base-pair region of the mitochondrial cytochrome oxidase I (mtCOI) gene was sequenced for 131 individuals for the chaetognath Eukrohnia hamata collected from diverse regions throughout the Arctic. DNA sequence analysis was done to characterize population genetic diversity and structure, phylogeography (i.e., geographic distribution of genetic lineages within species), and connectivity among regional populations. High haplotype diversity (Hd) and significant (p <0.02) negative values for Fu’s and Li’s F statistic imply that E. hamata is undergoing population expansion.. Patterns and pathways of population connectivity examined to test several migration hypotheses revealed that pan-Arctic population connectivity followed the primary ocean currents. The reliance of this ecologically important zooplankton species on Arctic Ocean currents has implications for future warming conditions, which have the potential to modify these currents, resulting in altered biogeographical distributions and population connectivity of Arctic zooplankton. 

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5. Pan-Arctic Phylogeography of the Pelagic Chaetognath Eukrohnia hamata.

   Passacantando, M. (February 2018, Ocean Sciences Meeting)

   Chaetognatha are highly-effective predatory components of the marine planktonic assemblages. Many species exhibit disjunct biogeographical distributions throughout the global ocean, and thus serve as sentinel species for examining climate-driven changes in ocean circulation on zooplankton species, communities, and food webs. Of particular interest are ecological changes in the Arctic, a region being drastically affected by climate change. In this study, a 650 base-pair region of the mitochondrial cytochrome oxidase I (mtCOI) gene was sequenced for 131 individuals for the chaetognath Eukrohnia hamata collected from diverse regions throughout the Arctic. DNA sequence analysis was done to characterize population genetic diversity and structure, phylogeography (i.e., geographic distribution of genetic lineages within species), and connectivity among regional populations. High haplotype diversity (Hd) and significant (p <0.02) negative values for Fu’s and Li’s F statistic imply that E. hamata is undergoing population expansion.. Patterns and pathways of population connectivity examined to test several migration hypotheses revealed that pan-Arctic population connectivity followed the primary ocean currents. The reliance of this ecologically important zooplankton species on Arctic Ocean currents has implications for future warming conditions, which have the potential to modify these currents, resulting in altered biogeographical distributions and population connectivity of Arctic zooplankton. 

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