NPR1 has been found to be a key transcriptional regulator in some plant defence responses. There are nine We used bioinformatics and reverse genetics approaches to study the expression and function of each We found six members of We discovered a new mode of NPR1 action in wheat at the
The wheat wild relative
- NSF-PAR ID:
- 10381712
- Author(s) / Creator(s):
- ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; more »
- Publisher / Repository:
- Nature Publishing Group
- Date Published:
- Journal Name:
- Nature Communications
- Volume:
- 13
- Issue:
- 1
- ISSN:
- 2041-1723
- Format(s):
- Medium: X
- Sponsoring Org:
- National Science Foundation
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Summary NPR1 homologues (TaNPR1 ) in wheat, but little research has been done to understand the function of thoseNPR1 ‐like genes in the wheat defence response against stem rust (Puccinia graminis f. sp.tritici ) pathogens.TaNPR1 .TaNPR1 located on homoeologous group 3 chromosomes (designated asTaG3NPR1 ) and three on homoeologous group 7 chromosomes (designated asTaG7NPR1 ). The group 3 NPR1 proteins regulate transcription of SA‐responsivePR genes. Downregulation of all theTaNPR1 homologues via virus‐induced gene co‐silencing resulted in enhanced resistance to stem rust. More specifically downregulatingTaG7NPR1 homeologues orTa7ANPR1 expression resulted in stem rust resistance phenotype. By contrast, knocking downTaG3NPR1 alone did not show visible phenotypic changes in response to the rust pathogen. Knocking outTa7ANPR1 enhanced resistance to stem rust. TheTa7ANPR1 locus is alternatively spliced under pathogen inoculated conditions.Ta7ANPR1 locus through an NB‐ARC–NPR1 fusion protein negatively regulating the defence to stem rust infection. -
Abstract Hessian fly (HF;
Mayetiola destructor Say) causes severe damage to wheat (Triticum aestivum L.) worldwide. Several resistance genes have been identified in wheat and wild relatives; however, HF populations are under strong selection pressure and evolve rapidly to overcome resistance. To ensure the availability of resistance sources, HF‐resistant germplasm KS18WGRC65 (TA5110, Reg. no. GP‐1042, PI 688251) was developed by Wheat Genetics Resource Center at Kansas State University as a breeding stock that carries resistance geneH26 fromAegilops tauschii Coss. KS18WGRC65 is a cytogenetically stable, homozygous, BC3F3:6line derived from the cross betweenAe. tauschii accession KU2147 and hard red winter wheat recurrent parent ‘Overley’. KS18WGRC65 exhibited no penalty for yield or other agronomic characters, making it a suitable source of HF resistance for wheat breeding. -
Abstract Background The genetic information contained in the genome of an organism is organized in genes and regulatory elements that control gene expression. The genomes of multiple plants species have already been sequenced and the gene repertory have been annotated, however,
cis -regulatory elements remain less characterized, limiting our understanding of genome functionality. These elements act as open platforms for recruiting both positive- and negative-acting transcription factors, and as such, chromatin accessibility is an important signature for their identification.Results In this work we developed a transgenic INTACT [isolation of nuclei tagged in specific cell types] system in tetraploid wheat for nuclei purifications. Then, we combined the INTACT system together with the assay for transposase-accessible chromatin with sequencing [ATAC-seq] to identify open chromatin regions in wheat root tip samples. Our ATAC-seq results showed a large enrichment of open chromatin regions in intergenic and promoter regions, which is expected for regulatory elements and that is similar to ATAC-seq results obtained in other plant species. In addition, root ATAC-seq peaks showed a significant overlap with a previously published ATAC-seq data from wheat leaf protoplast, indicating a high reproducibility between the two experiments and a large overlap between open chromatin regions in root and leaf tissues. Importantly, we observed overlap between ATAC-seq peaks and
cis -regulatory elements that have been functionally validated in wheat, and a good correlation between normalized accessibility and gene expression levels.Conclusions We have developed and validated an INTACT system in tetraploid wheat that allows rapid and high-quality nuclei purification from root tips. Those nuclei were successfully used to performed ATAC-seq experiments that revealed open chromatin regions in the wheat genome that will be useful to identify cis-regulatory elements. The INTACT system presented here will facilitate the development of ATAC-seq datasets in other tissues, growth stages, and under different growing conditions to generate a more complete landscape of the accessible DNA regions in the wheat genome.
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Summary Prolamin and resistance gene families are important in wheat food use and in defense against pathogen attacks, respectively. To better understand the evolution of these multi‐gene families, the
DNA sequence of a 2.8‐Mb genomic region, representing an 8.8 cM genetic interval and harboring multiple prolamin and resistance‐like gene families, was analyzed in the diploid grassAegilops tauschii , the D‐genome donor of bread wheat. Comparison with orthologous regions from rice,Brachypodium , and sorghum showed that theAe. tauschii region has undergone dramatic changes; it has acquired more than 80 non‐syntenic genes and only 13 ancestral genes are shared among these grass species. These non‐syntenic genes, including prolamin and resistance‐like genes, originated from various genomic regions and likely moved to their present locationsvia sequence evolution processes involving gene duplication and translocation. Local duplication of non‐syntenic genes contributed significantly to the expansion of gene families. Our analysis indicates that the insertion of prolamin‐related genes occurred prior to the separation of the Brachypodieae and Triticeae lineages. Unlike inBrachypodium , inserted prolamin genes have rapidly evolved and expanded to encode different classes of major seed storage proteins in Triticeae species. Phylogenetic analyses also showed that the multiple insertions of resistance‐like genes and subsequent differential expansion of eachR gene family. The high frequency of non‐syntenic genes and rapid local gene evolution correlate with the high recombination rate in the 2.8‐Mb region with nine‐fold higher than the genome‐wide average. Our results demonstrate complex evolutionary dynamics in this agronomically important region of Triticeae species. -
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