An official website of the United States government
Abstract As with phenotyping of any microscopic appendages, such as cilia or antennae, phenotyping of root hairs has been a challenge due to their complex intersecting arrangements in two-dimensional images and the technical limitations of automated measurements. Digital Imaging of Root Traits at Microscale (DIRT/μ) is a newly developed algorithm that addresses this issue by computationally resolving intersections and extracting individual root hairs from two-dimensional microscopy images. This solution enables automatic and precise trait measurements of individual root hairs. DIRT/μ rigorously defines a set of rules to resolve intersecting root hairs and minimizes a newly designed cost function to combinatorically identify each root hair in the microscopy image. As a result, DIRT/μ accurately measures traits such as root hair length distribution and root hair density, which are impractical for manual assessment. We tested DIRT/μ on three datasets to validate its performance and showcase potential applications. By measuring root hair traits in a fraction of the time manual methods require, DIRT/μ eliminates subjective biases from manual measurements. Automating individual root hair extraction accelerates phenotyping and quantifies trait variability within and among plants, creating new possibilities to characterize root hair function and their underlying genetics.
more »
« less
Hair, there and everywhere: A comparison of bat wing sensory hair distribution
Abstract Bat wing membranes are composed of specialized skin that is covered with small sensory hairs which are likely mechanosensory and have been suggested to help bats sense airflow during flight. These sensory hairs have to date been studied in only a few of the more than 1,400 bat species around the world. Little is known about the diversity of the sensory hair network across the bat phylogeny. In this study, we use high‐resolution photomicrographs of preserved bat wings from 17 species in 12 families to characterize the distribution of sensory hairs along the wing and among species. We identify general patterns of sensory hair distribution across species, including the apparent relationships of sensory hairs to intramembranous wing muscles, the network of connective tissues in the wing membrane, and the bones of the forelimb. We also describe distinctive clustering of these sensory structures in some species. We also quantified sensory hair density in several regions of interest in the propatagium, plagiopatagium, and dactylopagatia, finding that sensory hair density was higher proximally than distally. This examination of the anatomical organization of the sensory hair network in a comparative context provides a framework for existing research on sensory hair function and highlights avenues for further research.
more »
« less
- Award ID(s):
- 1931135
- PAR ID:
- 10397202
- Publisher / Repository:
- Wiley Blackwell (John Wiley & Sons)
- Date Published:
- Journal Name:
- The Anatomical Record
- Volume:
- 306
- Issue:
- 11
- ISSN:
- 1932-8486
- Format(s):
- Medium: X Size: p. 2681-2692
- Size(s):
- p. 2681-2692
- Sponsoring Org:
- National Science Foundation
More Like this
-
-
Strand-based hair simulations have recently become increasingly popular for a range of real-time applications. However, accurately simulating the full number of hair strands remains challenging. A commonly employed technique involves simulating a subset of guide hairs to capture the overall behavior of the hairstyle. Details are then enriched by interpolation using linear skinning. Hair interpolation enables fast real-time simulations but frequently leads to various artifacts during runtime. As the skinning weights are often pre-computed, substantial variations between the initial and deformed shapes of the hair can cause severe deviations in fine hair geometry. Straight hairs may become kinked, and curly hairs may become zigzags. This work introduces a novel physical-driven hair interpolation scheme that utilizes existing simulated guide hair data. Instead of directly operating on positions, we interpolate the internal forces from the guide hairs before efficiently reconstructing the rendered hairs based on their material model. We formulate our problem as a constraint satisfaction problem for which we present an efficient solution. Further practical considerations are addressed using regularization terms that regulate penetration avoidance and drift correction. We have tested various hairstyles to illustrate that our approach can generate visually plausible rendered hairs with only a few guide hairs and minimal computational overhead, amounting to only about 20% of conventional linear hair interpolation. This efficiency underscores the practical viability of our method for real-time applications.more » « less
-
Abstract The sense of touch in the largest marine mammals is poorly understood. While mysticetes possess specialized sensory hairs that are present through adulthood, descriptions of these structures are based almost entirely on examination of tissues in post‐mortem individuals. Sensory hairs have rarely been observed and described in living whales. We photographed Antarctic minke whalesBalaenoptera bonaerensisin the Western Antarctic Peninsula and used high‐resolution images to describe the number, distribution, orientation, and relative size of sensory hairs in freely swimming individuals. Sensory hairs were well developed. They were distributed on the tip of the lower jaw, the margins of the upper and lower jaw, and near the blowhole. Far fewer hairs were observed than reported for other mysticete species, including the related speciesBalaenoptera acutorostrata. Placement and apparent stiffness of sensory hairs within living tissue combined with observations and images of moving whales suggest these structures aid in detecting air and ice interfaces, and possibly, the boundaries of submerged prey fields.more » « less
-
Biological mechanosensation has been a source of inspiration for advancements in artificial sensory systems. Animals rely on sensory feedback to guide and adapt their behaviors and are equipped with a wide variety of sensors that carry stimulus information from the environment. Hair and hair-like sensors have evolved to support survival behaviors in different ecological niches. Here, we review the diversity of biological hair and hair-like sensors across the animal kingdom and their roles in behaviors, such as locomotion, exploration, navigation, and feeding, which point to shared functional properties of hair and hair-like structures among invertebrates and vertebrates. By reviewing research on the role of biological hair and hair-like sensors in diverse species, we aim to highlight biological sensors that could inspire the engineering community and contribute to the advancement of mechanosensing in artificial systems, such as robotics.more » « less
-
Abstract Root hairs are single-cell protrusions that enable roots to optimize nutrient and water acquisition. These structures attain their tubular shapes by confining growth to the cell apex, a process called tip growth. The actin cytoskeleton and endomembrane systems are essential for tip growth; however, little is known about how these cellular components coordinate their activities during this process. Here, we show that SPIRRIG (SPI), a beige and Chediak Higashi domain-containing protein involved in membrane trafficking, and BRK1 and SCAR2, subunits of the WAVE/SCAR (W/SC) actin nucleating promoting complex, display polarized localizations in Arabidopsis thaliana root hairs during distinct developmental stages. SPI accumulates at the root hair apex via post-Golgi compartments and positively regulates tip growth by maintaining tip-focused vesicle secretion and filamentous-actin integrity. BRK1 and SCAR2 on the other hand, mark the root hair initiation domain to specify the position of root hair emergence. Consistent with the localization data, tip growth was reduced in spi and the position of root hair emergence was disrupted in brk1 and scar1234. BRK1 depletion coincided with SPI accumulation as root hairs transitioned from initiation to tip growth. Taken together, our work uncovers a role for SPI in facilitating actin-dependent root hair development in Arabidopsis through pathways that might intersect with W/SC.more » « less
