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1. The upper ocean silicon cycle of the subarctic Pacific during the EXPORTS field campaign

   Brzezinski, Mark A. ; Varela, Diana E. ( February 2022 , Elementa)

   The contribution of diatoms to the production and export of organic carbon is highly modified in high-nutrient low-chlorophyll (HNLC) regions due to the decoupling of upper-ocean silicon and carbon cycling caused by low iron. The Si cycle and the role of diatoms in the biological carbon pump was examined at Ocean Station Papa (OSP) in the HNLC region of the northeastern subarctic Pacific during the NASA EX port Processes in the Ocean from RemoTe Sensing (EXPORTS) field study. Sampling occurred during the annual minimum in surface silicic acid concentration, [Si(OH)4 ]. Biogenic silica (bSi) concentrations were low being in the tens of nanomolar range despite high [Si(OH) 4 ], ~15 μM. On average the > 5.0 μm particle size fraction dominated Si dynamics accounting for 65% of bSi stocks and 81% of Si uptake compared to the small fraction (0.6 - 5.0 μm). Limitation of Si uptake was detected in the small, but not the large, size fraction. Small diatoms were co-limited with growth rate restricted by Fe and Si uptake restricted by [Si(OH) 4 ], whereas larger diatoms were only growth limited by Fe. About a third of silica production was exported out of the upper 100 m. The contribution of diatoms to carbon export (9 - 13%) was about twice their contribution to primary productivity (3 - 7%). The combination of low silica production, low diatom primary productivity and high bSi export efficiency at OSP was more similar to the dynamics in the subtropical gyres than to other HNLC regions. 

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2. Investigating the Nutrient Landscape in a Coastal Upwelling Region and Its Relationship to the Biological Carbon Pump

   https://doi.org/10.1029/2020GL087351  

   Stukel, M. R. ; Barbeau, K. A. ( March 2020 , Geophysical Research Letters)

   We investigated nutrient patterns and their relationship to vertical carbon export using results from 38 Lagrangian experiments in the California Current Ecosystem. The dominant mode of variability reflected onshore‐offshore nutrient gradients. A secondary mode of variability was correlated with silica excess and dissolved iron and likely reflects regional patterns of iron limitation. The biological carbon pump was enhanced in high‐nutrient and Fe‐stressed regions. Patterns in the nutrient landscape proved to be better predictors of the vertical flux of sinking particles than contemporaneous measurements of net primary production. Our results suggest an important role for Fe‐stressed diatoms in vertical carbon flux. They also suggest that either preferential recycling of N or non‐Redfieldian nutrient uptake by diatoms may lead to high PO₄³⁻:NO₃⁻and Si(OH)₄:NO₃⁻ratios, following export of P‐ and Si‐enriched organic matter. Increased export following Fe stress may partially explain inverse relationships between net primary productivity and export efficiency.

    

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3. Global Trends in the Distribution of Biogenic Minerals in the Ocean

   https://doi.org/10.1029/2022JC019470  

   Subhas, Adam V. ; Pavia, Frank J. ; Dong, Sijia ; Lam, Phoebe J. ( February 2023 , Journal of Geophysical Research: Oceans)

   The cycling of marine particulate matter is critical for sequestering carbon in the deep ocean and in marine sediments. Biogenic minerals such as calcium carbonate (CaCO₃) and opal add density to more buoyant organic material, facilitating particle sinking and export. Here, we compile and analyze a global data set of particulate organic carbon (POC), particulate inorganic carbon (PIC, or CaCO₃), and biogenic silica (bSi, or opal) concentrations collected using large volume pumps (LVPs). We analyze the distribution of all three biogenic phases in the small (1–53 μm) and large (>53 μm) size classes. Over the entire water column 76% of POC exists in the small size fraction. Similarly, the small size class contains 82% of PIC, indicating the importance of small‐sized coccolithophores to the PIC budget of the ocean. In contrast, 50% of bSi exists in the large size fraction, reflecting the larger size of diatoms and radiolarians compared with coccolithophores. We use PIC:POC and bSi:POC ratios in the upper ocean to document a consistent signal of shallow mineral dissolution, likely linked to biologically mediated processes. Sediment trap PIC:POC and bSi:POC are elevated with respect to LVP samples and increase strongly with depth, indicating the concentration of mineral phases and/or a deficit of POC in large sinking particles. We suggest that future sampling campaigns pair LVPs with sediment traps to capture the full particulate field, especially the large aggregates that contribute to mineral‐rich deep ocean fluxes, and may be missed by LVPs.

    

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4. Taxon-specific phytoplankton growth, nutrient utilization and light limitation in the oligotrophic Gulf of Mexico

   https://doi.org/10.1093/plankt/fbab028  

   Yingling, Natalia ; Kelly, Thomas B ; Shropshire, Taylor A ; Landry, Michael R ; Selph, Karen E ; Knapp, Angela N ; Kranz, Sven A ; Stukel, Michael R ( April 2021 , Journal of Plankton Research)

   Abstract The highly stratified, oligotrophic regions of the oceans are predominantly nitrogen limited in the surface ocean and light limited at the deep chlorophyll maximum (DCM). Hence, determining light and nitrogen co-limitation patterns for diverse phytoplankton taxa is crucial to understanding marine primary production throughout the euphotic zone. During two cruises in the deep-water Gulf of Mexico, we measured primary productivity (H13CO3−), nitrate uptake (15NO3−) and ammonium uptake (15NH4+) throughout the water column. Primary productivity declined with depth from the mixed layer to the DCM, averaging 27.1 mmol C m−2 d−1. The fraction of growth supported by NO3− was consistently low, with upper euphotic zone values ranging from 0.01 to 0.14 and lower euphotic zone values ranging from 0.03 to 0.44. Nitrate uptake showed strong diel patterns (maximum during the day), whereas ammonium uptake exhibited no diel variability. To parameterize taxon-specific phytoplankton nutrient and light utilization, we used a data assimilation approach (Bayesian Markov Chain Monte Carlo) including primary productivity, nutrient uptake and taxon-specific growth rate measurements. Parameters derived from this analysis define distinct niches for five phytoplankton taxa (Prochlorococcus, Synechococcus, diatoms, dinoflagellates and prymnesiophytes) and may be useful for constraining biogeochemical models of oligotrophic open-ocean systems. 

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5. Diminished carbon and nitrate assimilation drive changes in diatom elemental stoichiometry independent of silicification in an iron-limited assemblage

   https://doi.org/10.1038/s43705-022-00136-1  

   Maniscalco, Michael A. ; Brzezinski, Mark A. ; Lampe, Robert H. ; Cohen, Natalie R. ; McNair, Heather M. ; Ellis, Kelsey A. ; Brown, Matthew ; Till, Claire P. ; Twining, Benjamin S. ; Bruland, Kenneth W. ; et al ( July 2022 , ISME Communications)

   In the California Current Ecosystem, upwelled water low in dissolved iron (Fe) can limit phytoplankton growth, altering the elemental stoichiometry of the particulate matter and dissolved macronutrients. Iron-limited diatoms can increase biogenic silica (bSi) content >2-fold relative to that of particulate organic carbon (C) and nitrogen (N), which has implications for carbon export efficiency given the ballasted nature of the silica-based diatom cell wall. Understanding the molecular and physiological drivers of this altered cellular stoichiometry would foster a predictive understanding of how low Fe affects diatom carbon export. In an artificial upwelling experiment, water from 96 m depth was incubated shipboard and left untreated or amended with dissolved Fe or the Fe-binding siderophore desferrioxamine-B (+DFB) to induce Fe-limitation. After 120 h, diatoms dominated the communities in all treatments and displayed hallmark signatures of Fe-limitation in the +DFB treatment, including elevated particulate Si:C and Si:N ratios. Single-cell, taxon-resolved measurements revealed no increase in bSi content during Fe-limitation despite higher transcript abundance of silicon transporters and silicanin-1. Based on these findings we posit that the observed increase in bSi relative to C and N was primarily due to reductions in C fixation and N assimilation, driven by lower transcript expression of key Fe-dependent genes.

    

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