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Abstract An extensive data set of measurements within the Chukchi and Beaufort Seas is used to characterize the optical properties of seawater associated with different phytoplankton communities. Hierarchical cluster analysis of diagnostic pigment concentrations partitioned stations into four distinct surface phytoplankton communities based on taxonomic composition and average cell size. Concurrent optical measurements of spectral absorption and backscattering coefficients and remote‐sensing reflectance were used to characterize the magnitudes and spectral shapes of seawater optical properties associated with each phytoplankton assemblage. The results demonstrate measurable differences among communities in the average spectral shapes of the phytoplankton absorption coefficient. Similar or smaller differences were also observed in the spectral shapes of nonphytoplankton absorption coefficients and the particulate backscattering coefficient. Phytoplankton on average, however, contributed only 25% or less to the total absorption coefficient of seawater. Our analyses indicate that the interplay between the magnitudes and relative contributions of all optically significant constituents generally dampens any influence of varying phytoplankton absorption spectral shapes on the total absorption coefficient, yet there is still a marked discrimination observed in the spectral shape of the ratio of the total backscattering to total absorption coefficient and remote‐sensing reflectance among the phytoplankton assemblages. These spectral variations arise mainly from differences in the bio‐optical environment in which specific communities were found, as opposed to differences in the spectral shapes of phytoplankton optical properties per se. These results suggest potential approaches for the development of algorithms to assess phytoplankton community composition from measurements of seawater optical properties in western Arctic waters.
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DNA supercoiling-induced shapes alter minicircle hydrodynamic properties
Abstract DNA in cells is organized in negatively supercoiled loops. The resulting torsional and bending strain allows DNA to adopt a surprisingly wide variety of 3-D shapes. This interplay between negative supercoiling, looping, and shape influences how DNA is stored, replicated, transcribed, repaired, and likely every other aspect of DNA activity. To understand the consequences of negative supercoiling and curvature on the hydrodynamic properties of DNA, we submitted 336 bp and 672 bp DNA minicircles to analytical ultracentrifugation (AUC). We found that the diffusion coefficient, sedimentation coefficient, and the DNA hydrodynamic radius strongly depended on circularity, loop length, and degree of negative supercoiling. Because AUC cannot ascertain shape beyond degree of non-globularity, we applied linear elasticity theory to predict DNA shapes, and combined these with hydrodynamic calculations to interpret the AUC data, with reasonable agreement between theory and experiment. These complementary approaches, together with earlier electron cryotomography data, provide a framework for understanding and predicting the effects of supercoiling on the shape and hydrodynamic properties of DNA.
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- Award ID(s):
- 2107527
- PAR ID:
- 10403316
- Publisher / Repository:
- Oxford University Press
- Date Published:
- Journal Name:
- Nucleic Acids Research
- Volume:
- 51
- Issue:
- 8
- ISSN:
- 0305-1048
- Format(s):
- Medium: X Size: p. 4027-4042
- Size(s):
- p. 4027-4042
- Sponsoring Org:
- National Science Foundation
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