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1. Cyanobacterial Diazotroph Distributions in the Western South Atlantic

   https://doi.org/10.3389/fmars.2022.856643  

   Detoni, Amália Maria; Subramaniam, Ajit; Haley, Sheean T.; Dyhrman, Sonya T.; Calil, Paulo H. (May 2022, Frontiers in Marine Science)

   Inputs of new nitrogen by cyanobacterial diazotrophs are critical to ocean ecosystem structure and function. Relative to other ocean regions, there is a lack of data on the distribution of these microbes in the western South Atlantic. Here, the abundance of six diazotroph phylotypes: Trichodesmium , Crocosphaera , UCYN-A, Richelia associated with Rhizosolenia (Het-1) or Hemiaulus (Het-2), and Calothrix associated with Chaetoceros (Het-3) was measured by quantitative PCR (qPCR) of the nifH gene along a transect extending from the shelf-break to the open ocean along the Vitória-Trindade seamount chain (1200 km). Using nifH gene copies as a proxy for phylotype abundance, Crocosphaera signals were the most abundant, with a broad distribution throughout the study region. Trichodesmium signals were the second most abundant, with the greatest numbers confined to the warmer waters closer to the coast, and a significant positive correlation with temperature. The average signals for the host-associated diazotrophs (UCYN-A, Het-1, and Het-2) were consistently lower than for the other phylotypes. These findings expand measurements of cyanobacterial diazotroph distribution in the western South Atlantic, and provide a new resource to enhance modeling studies focused on patterns of nitrogen fixation in the global ocean. 

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2. Nitrogen fixation rates in the Guinea Dome and the equatorial upwelling regions in the Atlantic Ocean

   https://doi.org/10.1007/s10533-023-01089-w  

   Fernández-Carrera, Ana; Kiko, Rainer; Hauss, Helena; Hamilton, Douglas S.; Achterberg, Eric P.; Montoya, Joseph P.; Dengler, Marcus; Brandt, Peter; Subramaniam, Ajit (December 2023, Biogeochemistry)

   Abstract Biological nitrogen fixation is a key process balancing the loss of combined nitrogen in the marine nitrogen cycle. Its relevance in upwelling or high nutrient regions is still unclear, with the few available studies in these regions of the ocean reporting rates that vary widely from below detection limit to > 100 nmol N L⁻¹ d⁻¹. In the eastern tropical Atlantic Ocean, two open ocean upwelling systems are active in boreal summer. One is the seasonal equatorial upwelling, where the residual phosphorus associated with aged upwelled waters is suggested to enhance nitrogen fixation in this season. The other is the Guinea Dome, a thermal upwelling dome. We conducted two surveys along 23° W across the Guinea Dome and the Equator from 15° N to 5° S in September 2015 and August–September 2016 with high latitudinal resolution (20–60 nm between stations). The abundance ofTrichodesmiumcolonies was characterized by an Underwater Vision Profiler 5 and the total biological nitrogen fixation in the euphotic layer was measured using the¹⁵N₂technique. The highest abundances ofTrichodesmiumcolonies were found in the area of the Guinea Dome (9°–15° N) with a maximum of 3 colonies L⁻¹near the surface. By contrast, colonies were almost absent in the Equatorial band between 2° N and 5° S. The highest nitrogen fixation rate was measured at the northern edge of the Guinea Dome in 2016 (ca. 31 nmol N L⁻¹ d⁻¹). In this region, where diazotrophs thrived on a sufficient supply of both phosphorus and iron, a patchy distribution was unveiled by our increased spatial resolution scheme. In the Equatorial band, rates were considerably lower, ranging from below detection limit to ca. 4 nmol N L⁻¹ d⁻¹, with a clear difference in magnitude between 2015 (rates close to zero) and 2016 (average rates around 2 nmol N L⁻¹ d⁻¹). This difference seemed triggered by a contrasting supply of phosphorus between years. Our study stresses the importance of surveys with sampling at fine-scale spatial resolution, and shows unexpected high variability in the rates of nitrogen fixation in the Guinea Dome, a region where diazotrophy is a significant process supplying new nitrogen into the euphotic layer. 

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3. Surface macro- and micro-nutrients within the Copper River plume region respond to along-shore winds

   https://doi.org/10.1016/j.marchem.2025.104508  

   Ortega, ELS; Reister, I; Danielson, SL; Aguilar-Islas, AM (May 2025, Marine Chemistry)

   T he Copper River is a major source of freshwater to the Northern Gulf of Alaska (NGA) shelf with a seasonal cycle t hat reaches peak discharge in summer. This glacially-fed river also provides a large input of dissolved chemicals t o the NGA, and because of its large particle load, it impacts the distribution of particle-reactive elements. Summertime sampling of shelf water properties was carried out within the Copper River plume region during two y ears: first during a period of upwelling-favorable winds and higher river discharge (4–7 July 2019) and later during lower river discharge and more typical downwelling conditions (11–13 July 2020). Although these wind conditions were observed in separate years, both can occur over the course of a single summer. We found that the e xport of most nutrients to surface shelf waters was enhanced under upwelling-favorable winds accompanied by higher river discharge compared to downwelling conditions and lower discharge. For example, greater cross- shelf plume transport in 2019 resulted in higher mid-shelf surface inventories for nitrate +nitrite (N +N), silicic acid (H4 SiO 4 ), phosphate (PO4 3 − ), dissolved Fe (dFe), and dissolved Cu (dCu) compared to 2020. Entrainment of relatively macronutrient-rich subsurface waters under upwelling conditions may also have contributed t o the enhancement of these mid-shelf nutrient inventories. The observed high N:P ratios in plume waters were likely driven by the scavenging of P within particle-laden plume waters. Similarly, we observed lower than expected [dFe] (1.58 to 6.12 nM) in particle-laden plume waters, likely a result of enhanced scavenging combined with low concentrations of dissolved Fe-binding ligands. Although dNi and dZn have a river source, we observed lower concentrations in surface shelf waters under upwelling conditions, suggesting enhanced dilution b y relatively micronutrient-poor subsurface waters. Results highlight the influence of sub-seasonal variations in atmospheric forcing on nutrient distributions and suggest that this forcing also impacts the location and timing of primary production hotspots during summer, adding to the ecological mosaic of the NGA across a range of temporal and spatial scales. 

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4. Importance of mobile genetic element immunity in numerically abundant Trichodesmium clades

   https://doi.org/10.1038/s43705-023-00214-y  

   Webb, Eric A.; Held, Noelle A.; Zhao, Yiming; Graham, Elaina D.; Conover, Asa E.; Semones, Jake; Lee, Michael D.; Feng, Yuanyuan; Fu, Fei-xue; Saito, Mak A.; et al (February 2023, ISME Communications)

   Abstract The colony-forming cyanobacteria Trichodesmium spp. are considered one of the most important nitrogen-fixing genera in the warm, low nutrient ocean. Despite this central biogeochemical role, many questions about their evolution, physiology, and trophic interactions remain unanswered. To address these questions, we describe Trichodesmium pangenomic potential via significantly improved genomic assemblies from two isolates and 15 new >50% complete Trichodesmium metagenome-assembled genomes from hand-picked, Trichodesmium colonies spanning the Atlantic Ocean. Phylogenomics identified ~four N2 fixing clades of Trichodesmium across the transect, with T. thiebautii dominating the colony-specific reads. Pangenomic analyses showed that all T. thiebautii MAGs are enriched in COG defense mechanisms and encode a vertically inherited Type III-B Clustered Regularly Interspaced Short Palindromic Repeats and associated protein-based immunity system (CRISPR-Cas). Surprisingly, this CRISPR-Cas system was absent in all T. erythraeum genomes, vertically inherited by T. thiebautii, and correlated with increased signatures of horizontal gene transfer. Additionally, the system was expressed in metaproteomic and transcriptomic datasets and CRISPR spacer sequences with 100% identical hits to field-assembled, putative phage genome fragments were identified. While the currently CO2-limited T. erythraeum is expected to be a ‘winner’ of anthropogenic climate change, their genomic dearth of known phage resistance mechanisms, compared to T. thiebautii, could put this outcome in question. Thus, the clear demarcation of T. thiebautii maintaining CRISPR-Cas systems, while T. erythraeum does not, identifies Trichodesmium as an ecologically important CRISPR-Cas model system, and highlights the need for more research on phage-Trichodesmium interactions. 

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5. Nutrient-Colimited Trichodesmium as a Nitrogen Source or Sink in a Future Ocean

   https://doi.org/10.1128/AEM.02137-17  

   Walworth, Nathan G.; Fu, Fei-Xue; Lee, Michael D.; Cai, Xiaoni; Saito, Mak A.; Webb, Eric A.; Hutchins, David A.; Liu, Shuang-Jiang (February 2018, Applied and Environmental Microbiology)

   ABSTRACT Nitrogen-fixing (N 2 ) cyanobacteria provide bioavailable nitrogen to vast ocean regions but are in turn limited by iron (Fe) and/or phosphorus (P), which may force them to employ alternative nitrogen acquisition strategies. The adaptive responses of nitrogen fixers to global-change drivers under nutrient-limited conditions could profoundly alter the current ocean nitrogen and carbon cycles. Here, we show that the globally important N 2 fixer Trichodesmium fundamentally shifts nitrogen metabolism toward organic-nitrogen scavenging following long-term high-CO 2 adaptation under iron and/or phosphorus (co)limitation. Global shifts in transcripts and proteins under high-CO 2 /Fe-limited and/or P-limited conditions include decreases in the N 2 -fixing nitrogenase enzyme, coupled with major increases in enzymes that oxidize trimethylamine (TMA). TMA is an abundant, biogeochemically important organic nitrogen compound that supports rapid Trichodesmium growth while inhibiting N 2 fixation. In a future high-CO 2 ocean, this whole-cell energetic reallocation toward organic nitrogen scavenging and away from N 2 fixation may reduce new-nitrogen inputs by Trichodesmium while simultaneously depleting the scarce fixed-nitrogen supplies of nitrogen-limited open-ocean ecosystems. IMPORTANCE Trichodesmium is among the most biogeochemically significant microorganisms in the ocean, since it supplies up to 50% of the new nitrogen supporting open-ocean food webs. We used Trichodesmium cultures adapted to high-CO 2 conditions for 7 years, followed by additional exposure to iron and/or phosphorus (co)limitation. We show that “future ocean” conditions of high CO 2 and concurrent nutrient limitation(s) fundamentally shift nitrogen metabolism away from nitrogen fixation and instead toward upregulation of organic nitrogen-scavenging pathways. We show that the responses of Trichodesmium to projected future ocean conditions include decreases in the nitrogen-fixing nitrogenase enzymes coupled with major increases in enzymes that oxidize the abundant organic nitrogen source trimethylamine (TMA). Such a shift toward organic nitrogen uptake and away from nitrogen fixation may substantially reduce new-nitrogen inputs by Trichodesmium to the rest of the microbial community in the future high-CO 2 ocean, with potential global implications for ocean carbon and nitrogen cycling. 

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