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1. The relevance of pedigrees in the conservation genomics era

   https://doi.org/10.1111/mec.16192  

   Galla, Stephanie J.; Brown, Liz; Couch‐Lewis; Cubrinovska, Ilina; Eason, Daryl; Gooley, Rebecca M.; Hamilton, Jill A.; Heath, Julie A.; Hauser, Samantha S.; Latch, Emily K.; et al (January 2022, Molecular Ecology)
2. The conservation genomics of the endangered distylous gypsophile Oreocarya crassipes (Boraginaceae)

   Cohen, J. I. (January 2019, Conservation genetics)

   The Chihuahuan Desert includes many endemic angiosperm species, some having very restricted geographic ranges. One of these species is Oreocarya crassipes (I. M. Johnst.) Hasenstab & M. G. Simpson, an endangered distylous gypsophile from the Trans-Pecos region in southern Brewster County, Texas, USA. The species is known from 10 populations, and this small number of populations, human development in the area, a distylous breeding system, and edaphic requirements threaten the long-term viability of the species. Using both hundreds of single nucleotide polymorphisms identified via tunable genotyping-by-sequencing (tGBS) and 10 microsatellite loci, patterns of genetic diversity, demography, selection, and migration were examined for 192 individuals from four populations of O. crassipes. From the sampled individuals, two populations (clusters) were identified via multiple methodologies and with both types of data. With SNP data, population substructure was further resolved among one of these populations to identify two distinct groups of individuals. Multiple individuals recognized as having mixed ancestry, along with Fst values and AMOVA results, provide evidence of genetic exchange among populations, which is less common for gypsophiles than non-gypsophiles, and the rate of migration among populations has been increasing recently. The Fst values for O. crassipes are more similar to those of other rare species than to other gypsophiles. Additionally, while distyly specifically does not necessarily impact the population genetics of the species, allogamy, which is facilitated by distyly, seems to have played a role in the genetic structure of O. crassipes. 

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3. Population genomics for wildlife conservation and management

   https://doi.org/10.1111/mec.15720  

   Hohenlohe, Paul A.; Funk, W. Chris; Rajora, Om P. (January 2021, Molecular Ecology)

   null (Ed.)
4. Applications of Museum Collections and Genomics to Biodiversity Conservation

   https://doi.org/10.5531/cbc.linc.14.1.7  

   Penna, Anna; Clark, Lauren T; Salis, Alexander T; Macey, Suzanne; Blair, Mary E (January 2025, Lessons in Conservation)

   To address the challenges of sampling endangered or extinct species in the field, many studies have turned to historically underutilized sources of genetic material: natural history museums. Despite the fact that DNA from specimens collected decades or even hundreds of years ago is often fragmented and degraded, research has shown that historical DNA can still be used effectively to infer phylogenetic relationships and intra-specific patterns of population genetic structure. This synthesis aims to provide students and conservation practitioners with a solid understanding of the methodological strategies needed to apply genetic tools to natural history museum specimens. Specifically, we offer clear definitions and essential considerations for designing a conservation genomics project that includes both modern and historical samples. We recommend that instructors use this synthesis to introduce the foundational knowledge required for two companion exercises: “The Application of Conservation Museomics Approaches to the Protection of the Iberian Lynx (Lynx pardinus)” and “Designing a Conservation Genetics Project Incorporating DNA from Museum Specimens.” 

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5. Expanding the conservation genomics toolbox: Incorporating structural variants to enhance genomic studies for species of conservation concern

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   Wold, Jana; Koepfli, Klaus‐Peter; Galla, Stephanie J.; Eccles, David; Hogg, Carolyn J.; Le Lec, Marissa F.; Guhlin, Joseph; Santure, Anna W.; Steeves, Tammy E. (December 2021, Molecular Ecology)