An official website of the United States government
These are supplementary data, code, and model files associated with the manuscript "Detecting Transient Deformation at the Active Volcano Ol Doinyo Lengai in Tanzania with the TZVOLCANO Network" in consideration for publication in the Geophysical Research Letters. tzvolcano_code_and_models.zip contains all necessary Targeted Projection Operator (TPO) software, input, and output files for the GNSS inversions presented in our manuscript necessary to reproduce the results. The TPO program is a Unix/Linux code developed by Kang-Hyeun Ji working at the Korea Institute for Geoscience and Mineral Resources, Daejeon, South Korea. The source code is available in the supplementary Zenodo repository. We also include input and output model files for the USGS code dMODELS for reproducibility. Please see the README.txt file for more details. This study was funded by the US National Science Foundation grant number EAR-1943681 to Virginia Tech, internal university funds via Ardhi University, and Ministry of Science and ICT of Korea Basic Research Project GP2021-006 to the Korea Institute of Geosciences and Mineral Resources. We acknowledge and thank the EarthScope Consortium for archiving and making TZVOLCANO GNSS datasets freely available, supported by the National Science Foundation’s Seismological Facility for the Advancement of Geoscience (SAGE) Award under Cooperative Support Agreement EAR-1851048 and Geodetic Facility for the Advancement of Geoscience (GAGE) Award under NSF Cooperative Agreement EAR-1724794.
more »
« less
Elucidating the Magma Plumbing System of Ol Doinyo Lengai (Natron Rift, Tanzania) Using Satellite Geodesy and Numerical Modeling: Supplementary Model Files
{"Abstract":["Supplementary code and model files for the manuscript entitled "Elucidating the Magma Plumbing System of Ol Doinyo Lengai (Natron Rift, Tanzania) Using Satellite Geodesy and Numerical Modeling". OlDoinyoLengai_code_and_models.zip contains all necessary Matlab code, functions, input and output files for the GNSS, InSAR, and joint inversions presented in our manuscript necessary to reproduce the results. dMODELS is an open source code developed by the United States Geological Survey. The originally published program is available here: https://pubs.usgs.gov/tm/13/b1/ and the revised software archived here will also be available through the USGS website code.usgs.gov/vsc/publications/OlDoinyoLengai or by contacting Maurizio Battaglia. With this manuscript we are providing an update to dMODELS that includes improved graphics and joint inversion capabilities for both InSAR and GNSS data. <\/p>"],"Other":["This work was funded by the National Science Foundation (NSF) grant number EAR-1943681, Virginia Tech, Korean Institute of Geosciences and Minerals (KIGAM), and Ardhi University. Funding for this work also came from USAID via the Volcano Disaster Assistance Program and from the U.S. Geological Survey (USGS) Volcano Hazards Program.This material is based on services provided by the GAGE Facility, operated by UNAVCO, Inc., with support from the National Science Foundation, the National Aeronautics and Space Administration, and the U.S. Geological Survey under NSF Cooperative Agreement EAR-1724794. We acknowledge and thank Alaska Satellite Facility for making InSAR data freely available and TZVOLCANO GNSS data sets available through the UNAVCO data archive."]}
more »
« less
- Award ID(s):
- 1943681
- PAR ID:
- 10416307
- Publisher / Repository:
- Zenodo
- Date Published:
- Edition / Version:
- 4
- Subject(s) / Keyword(s):
- volcanology GNSS InSAR Ol Doinyo Lengai Tanzania numerical modeling
- Format(s):
- Medium: X
- Sponsoring Org:
- National Science Foundation
More Like this
-
-
The National Science Foundation Ice Core Facility (NSF-ICF, fka NICL) is in the process of building a new facility including freezer and scientist support space. The facility is being designed to minimize environmental impacts while maximizing ice core curation and science support. In preparation for the new facility, we are updating research equipment and integrating ice core data collection and processing by assigning International Generic Sample Numbers (IGSN) to advance the “FAIR”ness and establish clear provenance of samples, fostering the next generation of linked research data products. The NSF-ICF team, in collaboration with the US ice core science community, has established a metadata schema for the assignment of IGSNs to ice cores and samples. In addition, in close coordination with the US ice core community, we are adding equipment modules that expand traditional sets of physical property, visual stratigraphy, and electrical conductance ice core measurements. One such module is an ice core hyperspectral imaging (HSI) system. Adapted for the cold laboratory settings, the SPECIM SisuSCS HSI system can collect up to 224 bands using a continuous line-scanning mode in the visible and near-infrared (VNIR) 400-1000 nm spectral region. A modular system design allows expansion of spectral properties in the future. The second module is an updated multitrack electrical conductance system. These new data will guide real time optimization of sampling for planned analyses during ice core processing, especially for ice with deformed or highly compressed layering. The aim is to facilitate the collection of robust, long-term, and FAIR data archives for every future ice core section processed at NSF-ICF. The NSF-ICF is fully funded by the National Science Foundation and operated by the U.S. Geological Survey.more » « less
-
{"Abstract":["This data set provides files needed to run the simulations described in the manuscript entitled "Organic contaminants and atmospheric nitrogen at the graphene\u2013water interface: A simulation study" using the molecular dynamics software NAMD and LAMMPS. The output of the simulations, as well as scripts used to analyze this output, are also included. The files are organized into directories corresponding to the figures of the main text and supplementary information. They include molecular model structure files (NAMD psf), force field parameter files (in CHARMM format), initial atomic coordinates (pdb format), NAMD or LAMMPS configuration files, Colvars configuration files, NAMD log files, and NAMD output including restart files (in binary NAMD format) and some trajectories in dcd format (downsampled). Analysis is controlled by shell scripts (Bash-compatible) that call VMD Tcl scripts. A modified LAMMPS C++ source file is also included.<\/p>"],"Other":["This material is based upon work supported by the National Science Foundation under Grant No. DMR-1945589. A majority of the computing for this project was performed on the Beocat Research Cluster at Kansas State University, which is funded in part by NSF grants CHE-1726332, CNS-1006860, EPS-1006860, and EPS-0919443. This work used the Extreme Science and Engineering Discovery Environment (XSEDE) and Stampede2 at the Texas Advanced Computing Center through allocation BIO200030, which is supported by National Science Foundation grant number ACI-1548562."]}more » « less
-
This release (MAGs v2) is a major new version of this metagenome-assembled genome (MAG) set. All previous releases on this page (which only differ in the metadata) are designated "MAGs v1." The current release (MAGs v2) uses CheckM2 v1.0.2 filtering (≥70% completeness, ≤10% contamination) to expand this dataset to include 36,419 MAGs, with the following subcategories: Cronin_v1: Manually-curated subset of the "Field" category from MAGs v1. Cronin_v2: MAGs from raw bin filtering on the same assemblies used to generate Cronin_v1. Woodcroft_v2: MAGs from raw bin filtering on the same assemblies used to generate the MAGs reported in Woodcroft & Singleton et al. (2018). SIPS: Updated genomes from samples originating from a stable isotope probing (SIP) incubation experiment by Moira Hough et al. ("SIP" in MAGs v1), re-analyzed due to read truncation and sample linkage issues in MAGs v1. JGI: Expanded set of genomes from the Joint Genome Institute's metagenome annotation pipeline. FILES: Emerge_MAGs_v2.tar.gz - Archive containing the MAG files (.fna). metadata_MAGs_v2_EMERGE.tsv - Table containing source sample names and accessions, GTDB taxonomy information, CheckM2 quality reports, NCBI GenomeBatch- and MIMAG(6.0)-formatted sample attributes and other metadata for the MAGs. FUNDING: This research is a contribution of the EMERGE Biology Integration Institute (https://emerge-bii.github.io/), funded by the National Science Foundation, Biology Integration Institutes Program, Award # 2022070. This study was also funded by the Genomic Science Program of the United States Department of Energy Office of Biological and Environmental Research, grant #s DE-SC0004632. DE-SC0010580. and DE-SC0016440. We thank the Swedish Polar Research Secretariat and SITES for the support of the work done at the Abisko Scientific Research Station. SITES is supported by the Swedish Research Council's grant 4.3-2021-00164. Data collected at the Joint Genome Institute was generated under the following awards: The majority of sequencing at JGI was supported by BER Support Science Proposal 503530 (DOI: 10.46936/10.25585/60001148), conducted by the U.S. Department of Energy Joint Genome Institute (https://ror.org/04xm1d337), a DOE Office of Science User Facility supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231. Sequencing of SIP samples was performed under the Facilities Integrating Collaborations for User Science (FICUS) initiative (proposal 503547; award DOI: 10.46936/fics.proj.2017.49950/60006215) and used resources at the DOE Joint Genome Institute (https://ror.org/04xm1d337) and the Environmental Molecular Sciences Laboratory (https://ror.org/04rc0xn13), which are DOE Office of Science User Facilities. Both facilities are sponsored by the Office of Biological and Environmental Research and operated under Contract Nos. DE-AC02-05CH11231 (JGI) and DE-AC05-76RL01830 (EMSL).more » « less
-
Abstract We developed an open source, extensible Python‐based framework, that we call the Versatile Modeling Of Deformation (VMOD), for forward and inverse modeling of crustal deformation sources. VMOD abstracts from specific source model implementations, data types and inversion methods. We implement the most common geodetic source models which can be combined to model and analyze multi‐source deformation. VMOD supports Global Navigation Satellite System (GNSS), InSAR, electronic distance measurement, Leveling and tilt data. To infer source characteristics from observations, VMOD implements non‐linear least squares and Markov Chain Monte‐Carlo Bayesian inversions, including joint inversions using different sources of data. VMOD's structure allows for easy integration of new geodetic models, data types, and inversion strategies. We benchmark the forward models against other published results and the inversion approaches against other implementations. We apply VMOD to analyze deformation at Unimak Island, Alaska, observed with continuous and campaign GNSS, and ascending and descending InSAR time series generated from Sentinel‐1 satellite radar acquisitions. These data show an inflation pattern at Westdahl volcano and subsidence at Fisher Caldera. We use VMOD to test a range of source models by jointly inverting the GNSS and InSAR data sets. Our final model simultaneously constrains the parameters of two sources. Our results reveal a depressurizing spheroid under Fisher Caldera ∼4–6 km deep, contracting at a rate of ∼2–3 Mm3/yr, and a pressurizing spherical source underneath Westdahl volcano ∼6–8 km deep, inflating at ∼5 Mm3/yr. This and past applications of VMOD to volcanic unrest benefit from an extensible framework which supports jointly inversions of data sets for parameters of easily composable multi‐source models.more » « less
