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The effects of detergent sodium dodecyl sulfate (SDS) on protein structure and dynamics are fundamental to the most common laboratory technique used to separate proteins and determine their molecular weights: polyacrylamide gel electrophoresis. However, the mechanism by which SDS induces protein unfolding and the microstructure of protein–SDS complexes remain largely unknown. Here, we report a detailed account of SDS-induced unfolding of two proteins—I27 domain of titin and β-amylase—obtained through all-atom molecular dynamics simulations. Both proteins were found to spontaneously unfold in the presence of SDS at boiling water temperature on the time scale of several microseconds. The protein unfolding was found to occur via two distinct mechanisms in which specific interactions of individual SDS molecules disrupt the protein's secondary structure. In the final state of the unfolding process, the proteins are found to wrap around SDS micelles in a fluid necklace-and-beads configuration, where the number and location of bound micelles changes dynamically. The global conformation of the protein was found to correlate with the number of SDS micelles bound to it, whereas the number of SDS molecules directly bound to the protein was found to define the relaxation time scale of the unfolded protein. Our microscopic characterization of SDS–protein interactions sets the stage for future refinement of SDS–enabled protein characterization methods, including protein fingerprinting and sequencing using a solid-state nanopore.
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Reversible Electronic Patterning of a Dynamically Responsive Hydrogel Medium
Abstract A dynamically responsive hydrogel medium is prepared from two self‐assembling components, a polysaccharide (chitosan) and a surfactant (sodium dodecyl sulfate; SDS). It is shown that this medium can be patterned using an electrode “pen” to reconfigure supramolecular structure: cathodic writing induces neutral chitosan chains to form a crystalline network, while anodic writing generates cationic chitosan chains that electrostatically crosslink with anionic SDS micelles. Both supramolecular structures are re‐configurable and each is stabilized by structure‐induced shifts in chitosan's pKa, thus electronically written patterns can be erased, new patterns can be written, and patterns can be written in three dimensions. Further, it is shown that NaCl‐induced morphological transitions of the SDS micelles allow patterns to be reversibly concealed or revealed. To demonstrate the versatility of this medium for information storage, a quick response (QR) code is electronically written and it is shown that this code can be recognized by a standard cellphone app. This QR code can be concealed by making the medium opaque (i.e., by obscuring the pattern) or by making the pattern evanescent (i.e., by making pattern invisible). Overall, this work demonstrates that a dynamically responsive medium composed of simple, safe and sustainable components can be reversibly patterned with spatial and quantitative control using top‐down electronic inputs.
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- Award ID(s):
- 1932963
- PAR ID:
- 10419039
- Publisher / Repository:
- Wiley Blackwell (John Wiley & Sons)
- Date Published:
- Journal Name:
- Advanced Functional Materials
- Volume:
- 33
- Issue:
- 35
- ISSN:
- 1616-301X
- Format(s):
- Medium: X
- Sponsoring Org:
- National Science Foundation
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