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1. The C-Terminus of Perilipin 3 Shows Distinct Lipid Binding at Phospholipid-Oil-Aqueous Interfaces

   https://doi.org/10.3390/membranes11040265  

   Titus, Amber R.; Ridgway, Ellyse N.; Douglas, Rebecca; Brenes, Elena Sánchez; Mann, Elizabeth K.; Kooijman, Edgar E. (April 2021, Membranes)

   null (Ed.)

   Lipid droplets (LDs) are ubiquitously expressed organelles; the only intracellular organelles that contain a lipid monolayer rather than a bilayer. Proteins localize and bind to this monolayer as they do to intracellular lipid bilayers. The mechanism by which cytosolic LD binding proteins recognize, and bind, to this lipid interface remains poorly understood. Amphipathic α-helix bundles form a common motif that is shared between cytosolic LD binding proteins (e.g., perilipins 2, 3, and 5) and apolipoproteins, such as apoE and apoLp-III, found on lipoprotein particles. Here, we use pendant drop tensiometry to expand our previous work on the C-terminal α-helix bundle of perilipin 3 and the full-length protein. We measure the recruitment and insertion of perilipin 3 at mixed lipid monolayers at an aqueous-phospholipid-oil interface. We find that, compared to its C-terminus alone, the full-length perilipin 3 has a higher affinity for both a neat oil/aqueous interface and a phosphatidylcholine (PC) coated oil/aqueous interface. Both the full-length protein and the C-terminus show significantly more insertion into a fully unsaturated PC monolayer, contrary to our previous results at the air-aqueous interface. Additionally, the C-terminus shows a preference for lipid monolayers containing phosphatidylethanolamine (PE), whereas the full-length protein does not. These results strongly support a model whereby both the N-terminal 11-mer repeat region and C-terminal amphipathic α-helix bundle domains of perilipin 3 have distinct lipid binding, and potentially biological roles. 

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2. CHARMM‐GUI Membrane Builder for Lipid Droplet Modeling and Simulation

   https://doi.org/10.1002/cplu.202400013  

   Gee, Stephen; Glover, Kerney Jebrell; Wittenberg, Nathan J; Im, Wonpil (August 2024, ChemPlusChem)

   Abstract Lipid droplets (LDs) are organelles that are necessary for eukaryotic and prokaryotic metabolism and energy storage. They have a unique structure consisting of a spherical phospholipid monolayer encasing neutral lipids such as triacylglycerol (TAG). LDs have garnered increased interest for their implications in disease and for drug delivery applications. Consequently, there is an increased need for tools to study their structure, composition, and dynamics in biological contexts. In this work, we utilize CHARMM‐GUIMembrane Builderto simulate and analyze LDs with and without a plant LD protein, oleosin. The results show thatMembrane Buildercan generate biologically relevant all‐atom LD systems with relatively short equilibration times using a new TAG library having optimized headgroup parameters. TAG molecules originally inserted into a lipid bilayer aggregate in the membrane center, forming a TAG‐only core flanked by two monolayers. The TAG‐only core thickness stably grows with increasing TAG mole fraction. A 70 % TAG system has a core that is thick enough to house oleosin without its interactions with the distal leaflet or disruption of its secondary structure. We hope thatMembrane Buildercan aid in the future study of LD systems, including their structure and dynamics with and without proteins. 

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3. Mechanistic Insights into the Selective Targeting of MLX to Triacylglycerol-Rich Lipid Droplets

   https://doi.org/10.1101/2024.07.15.603605  

   Braun, R Jay; Swanson, Jessica_M J (September 2025, bioRxiv)

   The activation of transcription factor Max-Like Protein x (MLX) is modulated by competition between active dimerization and inactive association with cytosolic lipid droplets (LDs). However, LD association has been shown to depend on the neutral lipid composition. This work explores the mechanism by which MLX specifically targets LDs rich in triacylglycerol (TG) over those with abundant sterol esters (SE). We compare the association ensembles for a potential minimal targeting sequence, an amphipathic helix-loop-helix hairpin, and the full dimerization and cytoplasmic localization domain (DCD), finding the latter requires larger packing defects and quantifiably alters LD membrane properties. Surprisingly, direct interactions with TG neutral lipids are not observed for either sequence. Instead, targeting to SE-rich LDs is blocked for both sequences by insufficient packing defects. We additionally explore the full mechanism of hairpin association, aiming to understand sequence-specific features that enable strong membrane association. We find that there are multiple association pathways, but that each involves a catch, dive, snorkeling, and embedding phase. The combination of multiple catch and dive residues placed on opposing ends of amphipathic helices lengthens the catch phase, greatly enhancing association in a manner that resembles kinetic selection. Once bound, locking interhelical interactions block dissociation. Collectively, our findings suggest that in addition to relative binding affinities, both kinetics and altered surface properties due to protein association could influence competition within the LD proteome. SignificanceThe transcription factor Max-Like Protein x (MLX plays) a central role in metabolic regulation by responding to nutrient status and, simultaneously, neutral lipid composition. This work reveals how MLX selectively targets triacylglycerol-rich lipid droplets (LDs) through sequence-specific interactions with packing defects. We show that LD surface modulates MLX binding and that MLX in turn alters monolayer properties, highlighting a dynamic interplay between protein association and membrane properties. These findings provide new insight into how protein localization and function may be regulated at LD surfaces, with implications for nutrient sensing and, more broadly, transcriptional control relevant to metabolic and disease states. 

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4. Cooperativity of PIP2 and PS lipids modulates PH domain binding

   https://doi.org/10.1016/j.bpj.2025.02.019  

   Chen, Xiaobing; Cardenas, Alfredo E; Hudson, Rose B; Elber, Ron; Senning, Eric N; Baiz, Carlos R (April 2025, Biophysical Journal)

   Phosphatidylinositides constitute only 1%–3% of plasma membranes but play vital roles in cellular signaling. In particular, phosphatidylinositol 4,5-bisphosphate (PIP2) is involved in processes such as cytoskeleton organization and ion channel regulation. Pleckstrin homology (PH) domains are modular domains found in many proteins and are known for their strong affinity for PIP2 headgroups. The role of lipid composition in PH domain binding to PIP2, particularly the inclusion of phos phatidylserine (PS), is not well understood. This study explores the mechanisms of PH domain binding to PIP2 using fluores cence spectroscopy, Fourier transform infrared spectroscopy, two-dimensional infrared spectroscopy, and molecular dynamics simulations. We find that anionic PIP2 and PS alter the interfacial environment compared to phosphatidylcholines. Additionally, the PH domain promotes the localization of anionic lipid domains upon binding. Our results highlight the role of PSinlipid domain formation within membranes and its potential influence on protein binding affinities and lipid geometries. Spe cifically, we discovered a strong interaction between PIP2 and PS whereby hydrogen bonding within these anionic lipids drives localization in the membrane. This interaction also regulates protein binding at the membrane interface. Our findings suggest that cooperativity between PIP2 and PS is key to the formation of localized lipid domains and the recruitment of proteins such as the PH domain of phospholipase C-d1 

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5. Progress in Lipid Droplet Simulations: How Polarizability Shapes Triacylglycerol Behavior in Bulk and Interfacial Environments

   https://doi.org/10.1021/acs.jctc.5c00882  

   Braun, R Jay; Swanson, Jessica MJ (August 2025, Journal of Chemical Theory and Computation)

   Triacylglycerols (TG) are the primary neutral lipids in lipid droplets (LDs), organelles responsible for lipid storage, metabolism, and signaling. Molecular dynamics (MD) simulations have provided valuable insight into LD structure, but fixed-charge force fields struggle to capture TG behavior across both hydrophobic cores and polar interfaces. Here, we develop and evaluate a polarizable TG model using the Drude2023 lipid force field and benchmark its performance against experimental measurements of bulk density, TG−water interfacial tension, core hydration, and monolayer expansion. The Drude model accurately reproduces the experimental properties and captures key monolayer features such as surface-oriented TGs (SURF-TGs) and chemically distinct membrane packing defects. Compared to fixed-charge models such as C36-standard and C36-cutoff, the Drude polarizable model is the only force field able to capture the dual nature of TG at polar−nonpolar interfaces like the LD monolayer and more homogeneous hydrophobic environments, like the LD core. However, C36-standard is consistent with the Drude results for the LD monolayer, while C36-cutoff is consistent with the decreased hydration in the LD core. Even with large applied surface tensions, C36-cutoff does not produce Drude-like LD monolayer properties. These results highlight the importance of dynamic polarizability and establish Drude2023 as a more reliable framework for simulating TG in heterogeneous systems like LDs. 

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