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Deep generative models have enabled the automated synthesis of high-quality data for diverse applications. However, the most effective generative models are specialized to data from a single domain (e.g., images or text). Real-world applications such as healthcare require multi-modal data from multiple domains (e.g., both images and corresponding text), which are difficult to acquire due to limited availability and privacy concerns and are much harder to synthesize. To tackle this joint synthesis challenge, we propose an End-to-end MultImodal X-ray genERative model (EMIXER) for jointly synthesizing x-ray images and corresponding free-text reports, all conditional on diagnosis labels. EMIXER is an conditional generative adversarial model by 1) generating an image based on a label, 2) encoding the image to a hidden embedding, 3) producing the corresponding text via a hierarchical decoder from the image embedding, and 4) a joint discriminator for assessing both the image and the corresponding text. EMIXER also enables self-supervision to leverage vast amount of unlabeled data. Extensive experiments with real X-ray reports data illustrate how data augmentation using synthesized multimodal samples can improve the performance of a variety of supervised tasks including COVID-19 X-ray classification with very limited samples. The quality of generated images and reports are also confirmed by radiologists. We quantitatively show that EMIXER generated synthetic datasets can augment X-ray image classification, report generation models to achieve 5.94% and 6.9% improvement on models trained only on real data samples. Taken together, our results highlight the promise of state of generative models to advance clinical machine learning.
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Generative Modeling Helps Weak Supervision (and Vice Versa)
Many promising applications of supervised machine learning face hurdles in the acquisition of labeled data in sufficient quantity and quality, creating an expensive bottleneck. To overcome such limitations, techniques that do not depend on ground truth labels have been studied, including weak supervision and generative modeling. While these techniques would seem to be usable in concert, improving one another, how to build an interface between them is not well-understood. In this work, we propose a model fusing programmatic weak supervision and generative adversarial networks and provide theoretical justification motivating this fusion. The proposed approach captures discrete latent variables in the data alongside the weak supervision derived label estimate. Alignment of the two allows for better modeling of sample-dependent accuracies of the weak supervision sources, improving the estimate of unobserved labels. It is the first approach to enable data augmentation through weakly supervised synthetic images and pseudolabels. Additionally, its learned latent variables can be inspected qualitatively. The model outperforms baseline weak supervision label models on a number of multiclass image classification datasets, improves the quality of generated images, and further improves end-model performance through data augmentation with synthetic samples.
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- Award ID(s):
- 2106707
- PAR ID:
- 10427106
- Date Published:
- Journal Name:
- International Conference on Learning Representations
- Format(s):
- Medium: X
- Sponsoring Org:
- National Science Foundation
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Accepted Manuscript1.0
- Conference Paper:
- The DOI is not currently available.
