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  • Publisher's Accepted Manuscript: Meta‐omics highlights the diversity, activity and adaptations of fungi in deep oceanic crust
Title: Meta‐omics highlights the diversity, activity and adaptations of fungi in deep oceanic crust
Summary

The lithified oceanic crust, lower crust gabbros in particular, has remained largely unexplored by microbiologists. Recently, evidence for heterogeneously distributed viable and transcriptionally active autotrophic and heterotrophic microbial populations within low‐biomass communities was found down to 750 m below the seafloor at the Atlantis Bank Gabbro Massif, Indian Ocean. Here, we report on the diversity, activity and adaptations of fungal communities in the deep oceanic crust from ~10 to 780 mbsf by combining metabarcoding analyses with mid/high‐throughput culturing approaches. Metabarcoding along with culturing indicate a low diversity of viable fungi, mostly affiliated to ubiquitous (terrestrial and aquatic environments) taxa. Ecophysiological analyses coupled with metatranscriptomics point to viable and transcriptionally active fungal populations engaged in cell division, translation, protein modifications and other vital cellular processes. Transcript data suggest possible adaptations for surviving in the nutrient‐poor, lithified deep biosphere that include the recycling of organic matter. These active communities appear strongly influenced by the presence of cracks and veins in the rocks where fluids and resulting rock alteration create micro‐niches.
Authors:
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Award ID(s):
1658118
Publication Date:
NSF-PAR ID:
10453921
Journal Name:
Environmental Microbiology
Volume:
22
Issue:
9
Page Range or eLocation-ID:
p. 3950-3967
ISSN:
1462-2912
Publisher:
Wiley-Blackwell
Sponsoring Org:
National Science Foundation
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In addition, Expedition 368 added two more sites on the OMH (Sites U1504 and U1505). Expedition 367/368 completed operations at six of the seven sites (U1499–U1502, U1504, and U1505). Site U1503, however, was not completed beyond casing without coring to 990 m because of mechanical problems with the drilling equipment that prevented the expedition, after 25 May 2017, from operating with a drill string longer than 3400 m. New alternate Site U1504, proposed during Expedition 367, met this condition. Original Site U1505 also met the operational constraints of the 3400 m drill string (total) and was an alternate site for the already-drilled Site U1501. At Site U1499, we cored to 1081.8 m in 22.1 days with 52% recovery and then logged downhole data from 655 to 1020 m. In 31 days at Site U1500, we penetrated to 1529 m, cored a total of 1012.8 m with 37% recovery, and collected log data from 842 to 1133 m. At Site U1501, we cored to 697.1 m in 9.4 days with 78.5% recovery. We also drilled ahead for 433.5 m in Hole U1501D and then logged downhole data from 78.3 to 399.3 m. In 19.3 days at Site U1502, we penetrated 1679.0 m in Holes U1502A (758 m) and U1502B (921 m), set 723.7 m of casing and cored a total of 576.3 m with 53.5% recovery, and collected downhole log data from 785.3 to 875.3 m and seismic data through the 10¾ inch casing. At Site U1503, we penetrated 995.1 m and set 991.5 m of 10¾ inch casing, but no cores were taken because of a mechanical problem with the drawworks. At Site U1504, we took 40 rotary core barrel (RCB) cores over two holes. The cored interval between both holes was 277.3 m with 26.8% recovery. An 88.2 m interval was drilled in Hole U1504B. At Site U1505, we cored 668.0 m with 101.1% recovery. Logging data was collected from 80.1 to 341.2 m. Operations at this site covered 6.1 days. Except for Sites U1503 and U1505, all sites were drilled to acoustic basement. A total of 6.65 days were lost due to mechanical breakdown or waiting on spare supplies for repair of drilling equipment, but drilling options were severely limited from 25 May to the end of the expedition by the defective drawworks limiting deployment of drill string longer than 3400 m. At Site U1499, coring ~200 m into the interpreted acoustic basement sampled sedimentary rocks, possibly including early Miocene chalks underlain by Oligocene polymict breccias and poorly cemented gravels of unknown age comprising sandstone pebbles and cobbles. Preliminary structural and lithologic analysis suggests that the gravels might be early to late synrift sediment. At Site U1500, the main seismic reflector corresponds to the top of a basalt sequence at ~1379.1 m. We cored 149.90 m into this volcanic package and recovered 114.92 m (77%) of sparsely to moderately plagioclase-phyric basalt comprising numerous lava flows, including pillow lavas with glass, chilled margins, altered veins, hyaloclastites, and minor sediment. Preliminary geochemical analyses indicate that the basalt is tholeiitic. Sampling of the Pleistocene to lower Miocene sedimentary section at Sites U1499 and U1500 was not continuous for two reasons. First, there was extremely poor recovery in substantial intervals interpreted to be poorly lithified sands, possibly turbidites. Second, we chose to drill down without coring in some sections at Site U1500 to ensure sufficient time to achieve this site’s high-priority deep drilling objectives. The upper Miocene basin sequence, which consists of interbedded claystone, siltstone, and sandstone can be correlated between the two sites by seismic stratigraphic mapping and biostratigraphy. At Site U1501 on the OMH, coring ~45 m into the acoustic basement sampled prerift(?) deposits comprising sandstone to conglomerate of presumed Mesozoic age. These deposits are overlain by siliciclastic synrift sediments of Eocene to Oligocene age followed by primarily carbonaceous postrift sediments of early Miocene to Pleistocene age. Site U1502 on Ridge A was cased to 723.7 m. No coring was attempted shallower than 380 m to save operational time and because of low expectations for core recovery in the upper Plio–Pleistocene sequence. At this site, we recovered 180 m of hydrothermally altered brecciated basalts comprising sheet and pillow lavas below deep-marine sediments of Oligocene to late Miocene age. At Site U1503 on Ridge C, 991.5 m of casing was installed in preparation for the planned deep drilling to ~1800 m. No coring was performed due to mechanical failures, and the site was abandoned without further activity except for installation of a reentry cone. Coring at Site U1504 on the OMH, located ~45 km east of Site U1501, recovered mostly foliated, greenschist facies metamorphic rocks below late Eocene(?) carbonate rocks (partly reef debris) and early Miocene to Pleistocene sediments. At Site U1505, we cored to 480.15 m through Pleistocene to late Oligocene mainly carbonaceous ooze followed at depth by early Oligocene siliciclastic sediments. Efforts were made at every drill site to correlate the core with the seismic data and seismic stratigraphic unconformities interpreted in the Eocene to Plio–Pleistocene sedimentary sequence prior to drilling. The predrilling interpretation of ages of these unconformities was in general confirmed by drilling results, although some nontrivial corrections can be expected from detailed postexpedition work on integrating seismic stratigraphic interpretations with detailed bio- and lithostratigraphy. As a result of the limited length of drill string that could be deployed during the later part of Expedition 368, the secondary expedition objectives addressing the environmental history of the SCS and Southeast Asia received more focus than originally planned, allowing Site U1505 (alternate to Site U1501) to be included. Despite this change in focus, Expedition 367/368 provided solid evidence for a process of breakup that included vigorous synrift magmatism as opposed to the often-favored interpretation of the SCS margin as a magma-starved margin or a margin possibly overprinted at a much later stage by plume-related magmatism. In this broader perspective, Expedition 367/368 accomplished a fundamental objective of the two-expedition science program.« less
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