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1. Genetic and genomic architecture in eight strains of the laboratory opossum Monodelphis domestica

   https://doi.org/10.1093/g3journal/jkab389  

   Xiong, Xiao; Samollow, Paul B; Cao, Wenqi; Metz, Richard; Zhang, Chao; Leandro, Ana C; VandeBerg, John L; Wang, Xu (November 2021, G3 Genes|Genomes|Genetics)

   Rokas, A (Ed.)

   Abstract The gray short-tailed opossum (Monodelphis domestica) is an established laboratory-bred marsupial model for biomedical research. It is a critical species for comparative genomics research, providing the pivotal phylogenetic outgroup for studies of derived vs ancestral states of genomic/epigenomic characteristics for eutherian mammal lineages. To characterize the current genetic profile of this laboratory marsupial, we examined 79 individuals from eight established laboratory strains. Double digest restriction site-associated DNA sequencing and whole-genome resequencing experiments were performed to investigate the genetic architecture in these strains. A total of 66,640 high-quality single nucleotide polymorphisms (SNPs) were identified. We analyzed SNP density, average heterozygosity, nucleotide diversity, and population differentiation parameter Fst within and between the eight strains. Principal component and population structure analysis clearly resolve the strains at the level of their ancestral founder populations, and the genetic architecture of these strains correctly reflects their breeding history. We confirmed the successful establishment of the first inbred laboratory opossum strain LSD (inbreeding coefficient F > 0.99) and a nearly inbred strain FD2M1 (0.98 < F < 0.99), each derived from a different ancestral background. These strains are suitable for various experimental protocols requiring controlled genetic backgrounds and for intercrosses and backcrosses that can generate offspring with informative SNPs for studying a variety of genetic and epigenetic processes. Together with recent advances in reproductive manipulation and CRISPR/Cas9 techniques for Monodelphis domestica, the existence of distinctive inbred strains will enable genome editing on different genetic backgrounds, greatly expanding the utility of this marsupial model for biomedical research. 

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2. The bony cap and its distinction from the distal phalanx in humans, cats, and horses

   https://doi.org/10.7717/peerj.14352  

   Smith, Shannon; Yohe, Laurel R.; Solounias, Nikos (January 2023, PeerJ)

   It has been recognized as early as the Victorian era that the apex of the distal phalanx has a distinct embryological development from the main shaft of the distal phalanx. Recent studies in regenerative medicine have placed an emphasis on the role of the apex of the distal phalanx in bone regrowth. Despite knowledge about the unique aspects of the distal phalanx, all phalanges are often treated as equivalent. Our morphological study reiterates and highlights the special anatomical and embryological properties of the apex of the distal phalanx, and names the apex “the bony cap” to distinguish it. We posit that the distal phalanx shaft is endochondral, while the bony cap is intramembranous and derived from the ectodermal wall. During development, the bony cap may be a separate structure that will fuse to the endochondral distal phalanx in the adult, as it ossifies well before the distal phalanges across taxa. Our study describes and revives the identity of the bony cap, and we identify it in three mammalian species: humans, cats, and horses ( Homo sapiens, Felis catus domestica , and Equus caballus ). During the embryonic period, we show the bony cap has a thimble-like shape that surrounds the proximal endochondral distal phalanx. The bony cap may thus play an inductive role in the differentiation of the corresponding nail, claw, or hoof (keratin structures) of the digit. When it is not present or develops erroneously, the corresponding keratin structures are affected, and regeneration is inhibited. By terming the bony cap, we hope to inspire more attention to its distinct identity and role in regeneration. 

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3. A family of olfactory receptors uniquely expanded in marsupial and monotreme genomes are expressed by a T cell subset also unique to marsupials and monotremes

   https://doi.org/10.1016/j.dci.2024.105149  

   Sampson, Jordan M; Morrissey, Kimberly A; Douek, Daniel C; Miller, Robert D (February 2024, Developmental & Comparative Immunology)

   Olfactory receptors (OR), expressed on olfactory neurons, mediate the sense of smell. Recently, OR have also been shown to be expressed in non-olfactory tissues, including cells of the immune system. An analysis of single-cell transcriptomes of splenocytes of the gray short-tailed opossum (Monodelphis domestica) found OR are expressed on a subset of T cells, the γμ T cells, that are unique to marsupials and monotremes. A majority of opossum γμ T cells transcriptomes contain OR family 14 transcripts, specifically, from the OR14C subfamily. Amongst the mammals, the OR14 gene family is expanded in the genomes of marsupials and monotremes, and rarer or absent in placental mammals. In summary, here we demonstrate the intriguing correlation that a family of OR genes, abundant in the genomes of marsupials and monotremes, are ectopically expressed in a particular subset of T cells unique to the marsupials and monotremes. 

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4. The element of Paaw in marsupials and the middle ear of Philander opossum (Linnaeus, 1758) (Didelphimorphia, Didelphidae)

   Wible, John R.; Shelley, Sarah L.; Belz, Carly (May 2021, Annals of Carnegie Museum)

   null (Ed.)

   A small piece of cartilage or bone, the element of Paaw, occurs in the tendon of the stapedius muscle in some extant marsupial and placental mammals. It has been nearly a century since the last comprehensive treatment of the distribution of the element of Paaw in mammals. The current report updates knowledge on this structure by synthesizing the subsequent literature and providing new observations of extant marsupials from the collections of the Section of Mammals, Carnegie Museum of Natural History, and two online resources for CT scanned data: DigiMorph.org and MorphoSource.org. We found an element of Paaw in some representatives of all seven extant marsupial orders: Didelphimorphia, Microbiotheria, Notoryctemorphia, Peramelemorphia, Paucituberculata, Dasyuromorphia, and Diprotodontia. In the first four orders, the element is substantial, longer than the long axis of the fenestra vestiuli (oval window), which holds the stapedial footplate; it is smaller than the long axis of the fenestra vestibuli in Paucituberculata and we do not have measures to report for the last two orders. In most marsupials examined, the element of Paaw contacts the petrosal behind the oval window, suggesting it functions as a sesamoid bone, increasing the lever arm of the stapedius muscle. Although there is some variability in the presence of the bone both between and within individual museum specimens, we interpret this as the result of preparation techniques rather than true variation. To place the element of Paaw in its anatomical context, we describe in detail the ear region and middle-ear auditory apparatus of the gray four-eyed opossum, Philander opossum (Linnaeus, 1758), a didelphid from Central and South America, based on a CT scanned specimen from Carnegie Museum of Natural History. It has an ossified element of Paaw with a volume greater than the stapes. Comparisons are made with petrosals of Didelphis marsupialis Linnaeus, 1758, and Monodelphis domestica (Wagner, 1842), also based on CT scanned specimens. 

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5. Comparison of Hindlimb Muscle Architecture Properties in Small-Bodied, Generalist Mammals Suggests Similarity in Soft Tissue Anatomy

   https://doi.org/10.1007/s10914-022-09608-6  

   Wright, Mark A.; Sears, Karen E.; Pierce, Stephanie E. (April 2022, Journal of Mammalian Evolution)

   For the first 100+ million years of their evolutionary history, the majority of mammals were very small, and many exhibited relatively generalized locomotor ecologies. Among extant mammals, small-bodied, generalist species share similar hindlimb bone morphology and locomotor mechanics, but details of their musculature have not been investigated. To examine whether hindlimb muscle architecture properties are also similar, we dissected hindlimb muscles of the gray short-tailed opossum (Monodelphis domestica) and aggregated muscle properties from the literature for three other small-bodied mammals (Mus musculus, Rattus norvegicus, Cavia porcellus). We then studied hindlimb musculature from a whole-limb perspective and by separating the limb into nine anatomical regions. The region analysis explained substantially more variance in the data (r2: 0.601 > 0.074) but only detected six statistically significant pairwise species differences in muscle architecture properties. This finding suggests either deep conservation of therian hindlimb muscle properties or, more likely, a biomechanical constraint imposed by small body size. In addition, we find specialization for either large force production (i.e., PCSA) or longer active working ranges (i.e. long muscle fascicles) in proximal limb regions but neither specialization in more distal limb regions. This functional pattern may be key for small mammals to traverse across uneven and shifting substrates, regardless of environment. These findings are particularly relevant for researchers seeking to reconstruct and model soft tissue properties of extinct mammals during the early evolutionary history of the clade. 

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