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1. Oceanic islands of Wallacea as a source for dispersal and diversification of murine rodents

   https://doi.org/10.1111/jbi.13720  

   Rowe, Kevin C. ; Achmadi, Anang S. ; Fabre, Pierre‐Henri ; Schenk, John J. ; Steppan, Scott J. ; Esselstyn, Jacob A. ( October 2019 , Journal of Biogeography)

   To determine the historical dynamics of colonization and whether the relative timing of colonization predicts diversification rate in the species‐rich, murine rodent communities of Indo‐Australia.

   Indo‐Australian Archipelago including the Sunda shelf of continental Asia, Sahul shelf of continental Australia, the Philippines and Wallacea of Indonesia.

   Order Rodentia, Family Muridae.

   We used a fossil‐calibrated molecular phylogeny and Bayesian biogeographical modelling to infer the frequency and temporal sequence of biogeographical transitions among Sunda, Sahul, the Philippines and Wallacea. We estimated diversification rates for each colonizing lineage using a method‐of‐moments estimator of net diversification and Bayesian mixture model estimates of diversification rate shifts.

   We identified 17 biogeographical transitions, including nine originating from Sunda, seven originating from Sulawesi and broader Wallacea and one originating from Sahul. Wallacea was colonized eight times, the Phillipines five times, Sunda twice and Sahul twice. Net diversification rates ranged from 0.2 to 2.12 species/lineage/My with higher rates in secondary and later colonizers than primary colonizers. The highest rates were in the genusRattusand their closest relatives, irrespective of colonization history.

   Our inferences from murines demonstrate once again the substantial role of islands as sources of species diversity in terrestrial vertebrates of the IAA with most speciation events occurring on islands. Sulawesi and broader Wallacea have been a major source of colonists for both island and continental systems. Crossings of Wallace's Line were more common than subsequent transitions across Lydekker's Line to the east. While speciation following colonization of oceanic archipelagos and large islands is consistent with adaptive radiation theory and ideas regarding ecological opportunity, we did not observe a strong signal of incumbency effects. Rather, subsequent colonists of landmasses radiated unhindered by previous radiations.

    

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2. Dispersal and adaptive radiation of Bidens (Compositae) across the remote archipelagoes of Polynesia

   https://doi.org/10.1111/jse.12704  

   Knope, Matthew L. ; Funk, Vicki A. ; Johnson, Melissa A. ; Wagner, Warren L. ; Datlof, Erin M. ; Johnson, Gabriel ; Crawford, Daniel J. ; Bonifacino, J. Mauricio ; Morden, Clifford W. ; Lorence, David H. ; et al ( December 2020 , Journal of Systematics and Evolution)

   The genusBidens(Compositae) comprisesc. 230 species distributed across five continents, with the 41 Polynesian species displaying the greatest ecomorphological variation in the group. However, the genus has had a long and complicated taxonomic history, and its phylogenetic and biogeographic history are poorly understood. To resolve the evolutionary history of the PolynesianBidens, 152 individuals representing 91 species were included in this study, including 39 of the 41 described species from Polynesia. Four chloroplast and two nuclear DNA markers were utilized to estimate phylogenetic relationships, divergence times, and biogeographic history.Bidenswas found to be polyphyletic withinCoreopsis, consistent with previous assessments. The Polynesian radiation was resolved as monophyletic, with the initial dispersal into the Pacific possibly from South America to either the Hawaiian or Marquesas Islands. From the Marquesas,Bidensdispersed to the Society Islands, and ultimately to the Austral Islands. The initial diversification of the crown group in the Pacific is estimated to have occurred ~1.63 mya (0.74–2.72, 95% HPD), making PolynesianBidensamong the youngest and most rapid plant diversification events documented in the Pacific. Our findings suggest that relatively rare long‐distance dispersal and founder‐event speciation, coupled with subsequent loss of dispersal potential and within‐island speciation, can explain the repeated and explosive adaptive radiation ofBidensthroughout the archipelagoes of Polynesia.

    

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3. Biogeography of the Caribbean Cyrtognatha spiders

   https://doi.org/10.1038/s41598-018-36590-y  

   Čandek, Klemen ; Agnarsson, Ingi ; Binford, Greta J. ; Kuntner, Matjaž ( January 2019 , Scientific Reports)

   Island systems provide excellent arenas to test evolutionary hypotheses pertaining to gene flow and diversification of dispersal-limited organisms. Here we focus on an orbweaver spider genusCyrtognatha(Tetragnathidae) from the Caribbean, with the aims to reconstruct its evolutionary history, examine its biogeographic history in the archipelago, and to estimate the timing and route of Caribbean colonization. Specifically, we test ifCyrtognathabiogeographic history is consistent with an ancient vicariant scenario (the GAARlandia landbridge hypothesis) or overwater dispersal. We reconstructed a species level phylogeny based on one mitochondrial (COI) and one nuclear (28S) marker. We then used this topology to constrain a time-calibrated mtDNA phylogeny, for subsequent biogeographical analyses in BioGeoBEARS of over 100 originally sampledCyrtognathaindividuals, using models with and without a founder event parameter. Our results suggest a radiation of CaribbeanCyrtognatha, containing 11 to 14 species that are exclusively single island endemics. Although biogeographic reconstructions cannot refute a vicariant origin of the Caribbean clade, possibly an artifact of sparse outgroup availability, they indicate timing of colonization that is much too recent for GAARlandia to have played a role. Instead, an overwater colonization to the Caribbean in mid-Miocene better explains the data. From Hispaniola,Cyrtognathasubsequently dispersed to, and diversified on, the other islands of the Greater, and Lesser Antilles. Within the constraints of our island system and data, a model that omits the founder event parameter from biogeographic analysis is less suitable than the equivalent model with a founder event.

    

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4. Wallacean and Melanesian Islands Promote Higher Rates of Diversification within the Global Passerine Radiation Corvides

   https://doi.org/10.1093/sysbio/syac044  

   McCullough, Jenna M. ; Oliveros, Carl H. ; Benz, Brett W. ; Zenil-Ferguson, Rosana ; Cracraft, Joel ; Moyle, Robert G. ; Andersen, Michael J. ; Ho, ed., Simon ( June 2022 , Systematic Biology)

   The complex island archipelagoes of Wallacea and Melanesia have provided empirical data behind integral theories in evolutionary biology, including allopatric speciation and island biogeography. Yet, questions regarding the relative impact of the layered biogeographic barriers, such as deep-water trenches and isolated island systems, on faunal diversification remain underexplored. One such barrier is Wallace’s Line, a significant biogeographic boundary that largely separates Australian and Asian biodiversity. To assess the relative roles of biogeographic barriers—specifically isolated island systems and Wallace’s Line—we investigated the tempo and mode of diversification in a diverse avian radiation, Corvides (Crows and Jays, Birds-of-paradise, Vangas, and allies). We combined a genus-level data set of thousands of ultraconserved elements (UCEs) and a species-level, 12-gene Sanger sequence matrix to produce a well-resolved supermatrix tree that we leveraged to explore the group’s historical biogeography and the effects of the biogeographic barriers on their macroevolutionary dynamics. The tree is well resolved and differs substantially from what has been used extensively for past comparative analyses within this group. We confirmed that Corvides, and its major constituent clades, arose in Australia and that a burst of dispersals west across Wallace’s Line occurred after the uplift of Wallacea during the mid-Miocene. We found that dispersal across this biogeographic barrier was generally rare, though westward dispersals were two times more frequent than eastward dispersals. Wallacea’s central position between Sundaland and Sahul no doubt acted as a bridge for island-hopping dispersal out of Australia, across Wallace’s Line, to colonize the rest of Earth. In addition, we found that the complex island archipelagoes east of Wallace’s Line harbor the highest rates of net diversification and are a substantial source of colonists to continental systems on both sides of this biogeographic barrier. Our results support emerging evidence that island systems, particularly the geologically complex archipelagoes of the Indo-pacific, are drivers of species diversification. [Historical biogeography; island biogeography; Melanesia; molecular phylogenetics; state-dependent diversification and extinction.]

    

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5. A well‐resolved transcriptomic phylogeny of the mite harvestman family Pettalidae (Arachnida, Opiliones, Cyphophthalmi) reveals signatures of Gondwanan vicariance

   https://doi.org/10.1111/jbi.13828  

   Baker, Caitlin M. ; Boyer, Sarah L. ; Giribet, Gonzalo ( March 2020 , Journal of Biogeography)

   We explored the extent to which Gondwanan vicariance contributed to the circum‐Antarctic distribution of the mite harvestman family Pettalidae, a group of small, dispersal‐limited arachnids whose phylogeny has been poorly resolved, precluding rigorous biogeographic hypothesis testing.

   Continental landmasses of former temperate Gondwana (Chile, South Africa, Sri Lanka, Australia and New Zealand).

   Pettalidae, Opiliones.

   We generated transcriptomes for a phylogeny of 16 pettalids, spanning 9 genera. Data were analysed using maximum likelihood, Bayesian inference and coalescence methods. The phylogenetic position of the Sri Lankan genusPettaluswas further explored using quartet likelihood mapping and changes in gene likelihood scores. We also estimated divergence times and looked for signatures of extinction across Antarctica and central Australia using previously published phylogenies with near‐complete species sampling constrained to match our transcriptomic results. Finally, we estimated ancestral ranges and inferred instances of vicariance.

   We recovered a well‐supported topology with a division between taxa from landmasses that made up East Gondwana, and a grade of taxa from West Gondwana.Pettaluswas resolved either as the sister group of the Queensland‐endemicAustropurcellia, or as the sister group to a larger clade from East Gondwana, though favouringPettalus + Austropurcellia. Divergence times for multiple vicariance events coincided with Gondwana's breakup. Speciation–extinction analysis found one diversification process for the family: an initial burst of cladogenesis that slowed down through time.

   Given that the order of cladogenesis corresponds to the order in which Gondwana fragmented, and the concurrent timing of vicariance and rifting, Gondwanan breakup explains major biogeographic patterns in Pettalidae. Some divergences predate initial rifting, but there is no evidence oftrans‐oceanic dispersal. The Sri Lanka–eastern Australia relationship makes sense in the light of large‐scale extinction across Antarctica and central Australia; however, we find no clear signatures of mass extinction.

    

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