skip to main content


Title: E nvironmental niche adaptation revealed through fine scale phenological niche modelling
Abstract Aim

Phenology, the temporal response of a population to its climate, is a crucial behavioural trait shared across life on earth. How species adapt their phenologies to climate change is poorly understood but critical in understanding how species will respond to future change. We use a group of flies (Rhaphiomidas) endemic to the North American deserts to understand how species adapt to changing climatic conditions. Here, we explore a novel approach for taxa with constrained phenologies aimed to accurately model their environmental niche and relate this to phenological and morphological adaptations in a phylogenetic context.

Taxon

Insecta, Diptera, Mydidae,Rhaphiomidas.

Location

North America, Mojave, Sonoran and Chihuahuan Deserts.

Methods

We gathered geographical and phenological occurrence data for the entire genusRhaphiomidas, and, estimated a time calibrated phylogeny. We compared Daymet derived temperature values for a species adult occurrence period (phenology) with those derived from WorldClim data that is partitioned by month or quarter to examine what effect using more precise data has on capturing a species’ environmental niche. We then examined to what extent phylogenetic signal in phenological traits, climate tolerance and morphology can inform us about how species adapt to different environmental regimes.

Results

We found that the Bioclim temperature data, which are averages across monthly intervals, poorly represent the climate windows to which adult flies are actually adapted. Using temporally relevant climate data, we show that many species use a combination of morphological and phenological changes to adapt to different climate regimes. There are also instances where species changed only phenology to track a climate type or only morphology to adapt to different environments.

Main Conclusions

Without using a fine‐scale phenological data approach, identifying environmental adaptations could be misleading because the data do not represent the conditions the animals are actually experiencing. We find that fine‐scale phenological niche models are needed when assessing taxa that have a discrete phenological window that is key to their survival, accurately linking environment to morphology and phenology. Using this approach, we show thatRhaphiomidasuse a combination of niche tracking and adaptation to persist in new niches. Modelling the effect of phenology on such species’ niches will be critical for better predictions of how these species might respond to future climate change.

 
more » « less
NSF-PAR ID:
10459497
Author(s) / Creator(s):
 ;  ;  
Publisher / Repository:
Wiley-Blackwell
Date Published:
Journal Name:
Journal of Biogeography
Volume:
46
Issue:
10
ISSN:
0305-0270
Page Range / eLocation ID:
p. 2275-2288
Format(s):
Medium: X
Sponsoring Org:
National Science Foundation
More Like this
  1. Abstract Aim

    Introduced species offer insight on whether and how organisms can shift their ecological niches during translocation. The genusAmazonaoffers a clear test case, where sister species Red‐crowned (A. viridigenalis) and Lilac‐crowned Parrots (A. finschi) have established breeding populations in southern California following introduction via the pet trade from Mexico where they do not coexist. After establishment in the 1980s, introduced population sizes have increased, with mixed species flocks found throughout urban Los Angeles. Here, we investigate the differences between the environmental conditions of the native and introduced ranges of these now co‐occurring species.

    Location

    Southern California and Mexico.

    Methods

    Using environmental data on climate and habitat from their native and introduced ranges, we tested whether Red‐crowned and Lilac‐crowned Parrots have divergent realized niches between their native ranges, and whether each species has significantly shifted its realized niche to inhabit urban southern California. We also analysed data from Texas and Florida introductions of Red‐crowned Parrots for comparative analysis.

    Results

    There are significant differences in the native‐range niches of both parrot species, but a convergence into a novel, shared environmental niche into urban southern California, characterized by colder temperatures, less tree cover and lower rainfall. Texas and Florida Red‐crowned Parrots also show evidence for niche shifts with varying levels of niche conservatism through the establishment of somewhat different realized niches.

    Main Conclusions

    Despite significant niche shifts, introduced parrots are thriving, suggesting a broad fundamental niche and an ability to exploit urban resources. Unique niche shifts in different U.S. introductions indicate thatAmazonaparrots can adapt to diverse environmental conditions, with cities offering a resource niche and the timing of introduction playing a crucial role. Cities can potentially serve as refugia for threatened parrot species, but the risk of hybridization between species emphasizes the need for ongoing monitoring and genetic investigations.

     
    more » « less
  2. Abstract Aim

    While the floras of eastern Asia (EA) and eastern North America (ENA) share numerous genera, they have drastically different species richness. Despite an overall similarity in the quality of their temperate climates, the climate of EA is more spatially heterogeneous than that of ENA. Spatial environmental heterogeneity has been found to play a key role in influencing species richness in some regions. Here, we tested the following hypotheses: (a) EA species will occupy larger climatic niches than their ENA congeners, (b) congeners of EA‐ENA disjunct genera will occupy statistically equivalent climatic niches, and (c) congeners of EA‐ENA disjunct genera will occupy more similar climatic niches than expected by their respective physiographic context.

    Location

    North America and Asia.

    Time period

    Present.

    Major taxa studied

    Seed plants.

    Methods

    Predictions generated by ecological niche models (ENMs) were compared for 88 species across 31 EA‐ENA disjunct genera. ENM predictions were assessed for geographic and ecological breadth. Tests for niche equivalency and similarity were performed for congeneric species pairs to determine if species of disjunct genera have experienced niche conservatism or divergence.

    Results

    EA species tend to occupy greater amounts of climatic niche space than their close relatives in ENA. Over two‐thirds of the conducted niche comparisons show that EA‐ENA congeners either occupy equivalent climatic niche space within these broader climatic regimes or occupy non‐equivalent niches that are as similar as expected given their physiographic contexts.

    Main conclusions

    EA species tend to occupy larger climatic niches, and congeners of EA‐ENA disjunct genera tend to occupy equivalent/similar niche space within their respective distributions, with differences in occupied niches possibly due to their respective physiographic contexts, highlighting how niche‐neutral processes and niche conservatism may affect the distributions of disjunct species.

     
    more » « less
  3. Abstract Aim

    Efforts to predict the responses of soil fungal communities to climate change are hindered by limited information on how fungal niches are distributed across environmental hyperspace. We predict the climate sensitivity of North American soil fungal assemblage composition by modelling the ecological niches of several thousand fungal species.

    Location

    One hundred and thirteen sites in the United States and Canada spanning all biomes except tropical rain forest.

    Major Taxa Studied

    Fungi.

    Time Period

    2011–2018.

    Methods

    We combine internal transcribed spacer (ITS) sequences from two continental‐scale sampling networks in North America and cluster them into operational taxonomic units (OTUs) at 97% similarity. Using climate and soil data, we fit ecological niche models (ENMs) based on logistic ridge regression for all OTUs present in at least 10 sites (n = 8597). To describe the compositional turnover of soil fungal assemblages over climatic gradients, we introduce a novel niche‐based metric of climate sensitivity, the Sørensen climate sensitivity index. Finally, we map climate sensitivity across North America.

    Results

    ENMs have a mean out‐of‐sample predictive accuracy of 73.8%, with temperature variables being strong predictors of fungal distributions. Soil fungal climate niches clump together across environmental space, which suggests common physiological limits and predicts abrupt changes in composition with respect to changes in climate. Soil fungi in North American climates are more likely to be limited by cold and dry conditions than by warm and wet conditions, and ectomycorrhizal fungi generally tolerate colder temperatures than saprotrophic fungi. Sørensen climate sensitivity exhibits a multimodal distribution across environmental space, with a peak in climates corresponding to boreal forests.

    Main Conclusions

    The boreal forest occupies an especially precarious region of environmental space for the composition of soil fungal assemblages in North America, as even small degrees of warming could trigger large compositional changes characterized mainly by an influx of warm‐adapted species.

     
    more » « less
  4. Abstract Background

    Insects have evolved complex visual systems and display an astonishing range of adaptations for diverse ecological niches. Species ofDrosophila melanogastersubgroup exhibit extensive intra- and interspecific differences in compound eye size. These differences provide an excellent opportunity to better understand variation in insect eye structure and the impact on vision. Here we further explored the difference in eye size betweenD. mauritianaand its sibling speciesD. simulans.

    Results

    We confirmed thatD. mauritianahave rapidly evolved larger eyes as a result of more and wider ommatidia thanD. simulanssince they recently diverged approximately 240,000 years ago. The functional impact of eye size, and specifically ommatidia size, is often only estimated based on the rigid surface morphology of the compound eye. Therefore, we used 3D synchrotron radiation tomography to measure optical parameters in 3D, predict optical capacity, and compare the modelled vision to in vivo optomotor responses. Our optical models predicted higher contrast sensitivity forD. mauritiana, which we verified by presenting sinusoidal gratings to tethered flies in a flight arena. Similarly, we confirmed the higher spatial acuity predicted forDrosophila simulanswith smaller ommatidia and found evidence for higher temporal resolution.

    Conclusions

    Our study demonstrates that even subtle differences in ommatidia size between closely relatedDrosophilaspecies can impact the vision of these insects. Therefore, further comparative studies of intra- and interspecific variation in eye morphology and the consequences for vision among otherDrosophilaspecies, other dipterans and other insects are needed to better understand compound eye structure–function and how the diversification of eye size, shape, and function has helped insects to adapt to the vast range of ecological niches.

     
    more » « less
  5. PREMISE

    Environmental heterogeneity influences plant distributions and diversity at several spatial scales. In temperate forests, fine‐scale environmental variation may promote local coexistence among herbaceous species by allowing plants to spatially partition microsites within forest stands. Here we argue that shallow soils, low soil water‐holding capacity and fertility, and reduced light near tree boles should favor short, shallow‐rooted, evergreen species likeAnemone acutilobawith low moisture, nutrient, and light requirements. Farther from trees, richer, deeper soils should favor taller, deeper‐rooted herbs with greater moisture and nutrient demands, such asSanguinaria canadensisandTrillium flexipes.

    METHODS

    We tested these hypotheses by mapping the fine‐scale distributions ofAnemone,Sanguinaria, andTrilliumindividuals within a 50 × 50 m plot, comparing local species’ distributions with respect to soil depth and proximity to neighboring trees, and characterizing intraspecific and interspecific spatial associations.

    RESULTS

    Local plant distributions were consistent with our predictions based on leaf height, physiology, and phenology.Anemonewas found in microsites on shallower soils and closer to trees than eitherSanguinariaorTrillium. In all three species, individual plants were spatially aggregated within 2 m, but spatially segregated from individuals of the other species beyond 2 m.

    CONCLUSIONS

    Differential plant responses to fine‐scale environmental heterogeneity and observed spatial associations suggest that local species‐environment associations could facilitate coexistence. These findings illustrate how fine‐scale environmental heterogeneity coupled with phenological and physiological differences likely contribute to spatial niche partitioning among spring‐flowering forest herbs and maintain high local plant diversity within temperate forests.

     
    more » « less