An official website of the United States government
Machine learning (ML) continues to revolutionize computational chemistry for accelerating predictions and simulations by training on experimental or accurate but expensive quantum mechanical (QM) calculations. Photodynamics simulations require hundreds of trajectories coupled with multiconfigurational QM calculations of excited-state potential energies surfaces that contribute to the prohibitive computational cost at long timescales and complex organic molecules. ML accelerates photodynamics simulations by combining nonadiabatic photodynamics simulations with an ML model trained with high-fidelity QM calculations of energies, forces, and non-adiabatic couplings. This approach has provided time-dependent molecular structural information for understanding photochemical reaction mechanisms of organic reactions in vacuum and complex environments (i.e., explicit solvation). This review focuses on the fundamentals of QM calculations and ML techniques. We, then, discuss the strategies to balance adequate training data and the computational cost of generating these training data. Finally, we demonstrate the power of applying these ML-photodynamics simulations to understand the origin of reactivities and selectivities of organic photochemical reactions, such as cis–trans isomerization, [2 + 2]-cycloaddition, 4π-electrostatic ring-closing, and hydrogen roaming mechanism.
more »
« less
Machine learning predictions of electronic couplings for charge transport calculations of P3HT
Abstract The purpose of this work is to lower the computational cost of predicting charge mobilities in organic semiconductors, which will benefit the screening of candidates for inexpensive solar power generation. We characterize efforts to minimize the number of expensive quantum chemical calculations we perform by training machines to predict electronic couplings between monomers of poly‐(3‐hexylthiophene). We test five machine learning techniques and identify random forests as the most accurate, information‐dense, and easy‐to‐implement approach for this problem, achieving mean‐absolute‐error of 0.02 [× 1.6 × 10−19J],R2= 0.986, predicting electronic couplings 390 times faster than quantum chemical calculations, and informing zero‐field hole mobilities within 5% of prior work. We discuss strategies for identifying small effective training sets. In sum, we demonstrate an example problem where machine learning techniques provide an effective reduction in computational costs while helping to understand underlying structure–property relationships in a materials system with broad applicability.
more »
« less
- PAR ID:
- 10460484
- Publisher / Repository:
- Wiley Blackwell (John Wiley & Sons)
- Date Published:
- Journal Name:
- AIChE Journal
- Volume:
- 65
- Issue:
- 12
- ISSN:
- 0001-1541
- Format(s):
- Medium: X
- Sponsoring Org:
- National Science Foundation
More Like this
-
-
Abstract Kohn-Sham density functional theory (DFT) is a standard tool in most branches of chemistry, but accuracies for many molecules are limited to 2-3 kcal ⋅ mol−1with presently-available functionals. Ab initio methods, such as coupled-cluster, routinely produce much higher accuracy, but computational costs limit their application to small molecules. In this paper, we leverage machine learning to calculate coupled-cluster energies from DFT densities, reaching quantum chemical accuracy (errors below 1 kcal ⋅ mol−1) on test data. Moreover, density-basedΔ-learning (learning only the correction to a standard DFT calculation, termedΔ-DFT ) significantly reduces the amount of training data required, particularly when molecular symmetries are included. The robustness ofΔ-DFT is highlighted by correcting “on the fly” DFT-based molecular dynamics (MD) simulations of resorcinol (C6H4(OH)2) to obtain MD trajectories with coupled-cluster accuracy. We conclude, therefore, thatΔ-DFT facilitates running gas-phase MD simulations with quantum chemical accuracy, even for strained geometries and conformer changes where standard DFT fails.more » « less
-
Abstract Computational modeling of chemical and biological systems at atomic resolution is a crucial tool in the chemist’s toolset. The use of computer simulations requires a balance between cost and accuracy: quantum-mechanical methods provide high accuracy but are computationally expensive and scale poorly to large systems, while classical force fields are cheap and scalable, but lack transferability to new systems. Machine learning can be used to achieve the best of both approaches. Here we train a general-purpose neural network potential (ANI-1ccx) that approaches CCSD(T)/CBS accuracy on benchmarks for reaction thermochemistry, isomerization, and drug-like molecular torsions. This is achieved by training a network to DFT data then using transfer learning techniques to retrain on a dataset of gold standard QM calculations (CCSD(T)/CBS) that optimally spans chemical space. The resulting potential is broadly applicable to materials science, biology, and chemistry, and billions of times faster than CCSD(T)/CBS calculations.more » « less
-
Inverse problems continue to garner immense interest in the physical sciences, particularly in the context of controlling desired phenomena in non-equilibrium systems. In this work, we utilize a series of deep neural networks for predicting time-dependent optimal control fields, E ( t ), that enable desired electronic transitions in reduced-dimensional quantum dynamical systems. To solve this inverse problem, we investigated two independent machine learning approaches: (1) a feedforward neural network for predicting the frequency and amplitude content of the power spectrum in the frequency domain ( i.e. , the Fourier transform of E ( t )), and (2) a cross-correlation neural network approach for directly predicting E ( t ) in the time domain. Both of these machine learning methods give complementary approaches for probing the underlying quantum dynamics and also exhibit impressive performance in accurately predicting both the frequency and strength of the optimal control field. We provide detailed architectures and hyperparameters for these deep neural networks as well as performance metrics for each of our machine-learned models. From these results, we show that machine learning, particularly deep neural networks, can be employed as cost-effective statistical approaches for designing electromagnetic fields to enable desired transitions in these quantum dynamical systems.more » « less
-
Lian, T (Ed.)The fast and accurate simulation of chemical reactions is a major goal of computational chemistry. Recently, the pursuit of this goal has been aided by machine learning interatomic potentials (MLIPs), which provide energies and forces at quantum mechanical accuracy but at a fraction of the cost of the reference quantum mechanical calculations. Assembling the training set of relevant configurations is key to building the MLIP. Here, we demonstrate two approaches to training reactive MLIPs based on reaction pathway information. One approach exploits reaction datasets containing reactant, product, and transition state structures. Using an SN2 reaction dataset, we accurately locate reaction pathways and transition state geometries of up to 170 unseen reactions. In another approach, which does not depend on data availability, we present an efficient active learning procedure that yields an accurate MLIP and converged minimum energy path given only the reaction end point structures, avoiding quantum mechanics driven reaction pathway search at any stage of training set construction. We demonstrate this procedure on an SN2 reaction in the gas phase and with a small number of solvating water molecules, predicting reaction barriers within 20 meV of the reference quantum chemistry method. We then apply the active learning procedure on a more complex reaction involving a nucleophilic aromatic substitution and proton transfer, comparing the results against the reactive ReaxFF force field. Our active learning procedure, in addition to rapidly finding reaction paths for individual reactions, provides an approach to building large reaction path databases for training transferable reactive machine learning potentials.more » « less
