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Abstract Several automated molecular methods have emerged for distinguishing eukaryote species based on DNA sequence data. However, there are knowledge gaps around which of these single‐locus methods is more accurate for the identification of microalgal species, such as the highly diverse and ecologically relevant diatoms. We applied genetic divergence, Automatic Barcode Gap Discovery for primary species delimitation (ABGD), Assemble Species by Automatic Partitioning (ASAP), Statistical Parsimony Network Analysis (SPNA), Generalized Mixed Yule Coalescent (GMYC) and Poisson Tree Processes (PTP) using partialcox1,rbcL,5.8S + ITS2,ITS1 + 5.8S + ITS2 markers to delineate species and compare to published polyphasic identification data (morphological features, phylogeny and sexual reproductive isolation) to test the resolution of these methods. ASAP, ABGD, SPNA and PTP models resolved species ofEunotia,Seminavis, Nitzschia, SellaphoraandPseudo‐nitzschiacorresponding to previous polyphasic identification, including reproductive isolation studies. In most cases, these models identified diatom species in similar ways, regardless of sequence fragment length. GMYC model presented smallest number of results that agreed with previous published identification. Following the recommendations for proper use of each model presented in the present study, these models can be useful tools to identify cryptic or closely related species of diatoms, even when the datasets have relatively few sequences.
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The systematics of Lobophora (Dictyotales, Phaeophyceae) in the western Atlantic and eastern Pacific oceans: eight new species
Lobophorais a common tropical to temperate genus of brown algae found in a plethora of habitats including shallow and deep‐water coral reefs, rocky shores, mangroves, seagrass beds, and rhodoliths beds. Recent molecular studies have revealed thatLobophoraspecies diversity has been severely underestimated. Current estimates of the species numbers range from 100 to 140 species with a suggested center of diversity in the Central Indo‐Pacific. This study used three molecular markers (cox3,rbcL,psbA), different single‐marker species delimitation methods (GMYC,ABGD,PTP), and morphological evidence to evaluateLobophoraspecies diversity in the Western Atlantic and the Eastern Pacific oceans.Cox3 provided the greatest number of primary species hypotheses(PSH), followed byrbcL and thenpsbA.GMYCspecies delimitation analysis was the most conservative across all three markers, followed byPTP, and then ABGD. The most informative diagnostic morphological characters were thallus thickness and number of cell layers in both the medulla and the dorsal/ventral cortices. Following a consensus approach, 14 distinctLobophoraspecies were identified in the Western Atlantic and five in the Eastern Pacific. Eight new species from these two oceans were herein described:L. adpressasp. nov.,L. cocoensissp. nov.,L. colombianasp. nov.,L. crispatasp. nov.,L. delicatasp. nov.,L. dispersasp. nov.,L. panamensissp. nov., andL. tortugensissp. nov. This study showed that the best approach to confidently identifyLobophoraspecies is to analyzeDNAsequences (preferablycox3 andrbcL) followed by comparative morphological and geographical assessment.
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- Award ID(s):
- 1754504
- PAR ID:
- 10460554
- Publisher / Repository:
- Wiley-Blackwell
- Date Published:
- Journal Name:
- Journal of Phycology
- Volume:
- 55
- Issue:
- 3
- ISSN:
- 0022-3646
- Page Range / eLocation ID:
- p. 611-624
- Format(s):
- Medium: X
- Sponsoring Org:
- National Science Foundation
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