An official website of the United States government
ABSTRACT Herbicide resistance in agricultural weeds has become one of the greatest challenges for sustainable crop production. The repeated evolution of herbicide resistance provides an excellent opportunity to study the genetic and physiological basis of the resistance phenotype and the evolutionary responses to human‐mediated selection pressures.Lolium multiflorumis a ubiquitous weed that has evolved herbicide resistance repeatedly around the world in various cropping systems. We assembled and annotated a chromosome‐scale genome forL. multiflorumand elucidated the genetic architecture of paraquat resistance by performing quantitative trait locus analysis, genome‐wide association studies, genetic divergence analysis and transcriptome analyses from paraquat‐resistant and ‐susceptibleL. multiflorumplants. We identified two regions on chromosome 5 that were associated with paraquat resistance. These regions both showed evidence for positive selection among the resistant populations we sampled, but the effects of this selection on the genome differed, implying a complex evolutionary history. In addition, these regions contained candidate genes that encoded cellular transport functions, including a novel multidrug and toxin extrusion (MATE) protein and a cation transporter previously shown to interact with polyamines. Given thatL. multiflorumis a weed and a cultivated crop species, the genomic resources generated will prove valuable to a wide spectrum of the plant science community. Our work contributes to a growing body of knowledge on the underlying evolutionary and ecological dynamics of rapid adaptation to strong anthropogenic selection pressure that could help initiate efforts to improve weed management practices in the long term for a more sustainable agriculture.
more »
« less
PROTAC for agriculture: learning from human medicine to generate new biotechnological weed control solutions
Abstract Weed control has relied on the use of organic and inorganic molecules that interfere with druggable targets, especially enzymes, for almost a century. This approach, although effective, has resulted in multiple cases of herbicide resistance. Furthermore, the rate of discovery of new druggable targets that are selective and with favorable environmental profiles has slowed down, highlighting the need for innovative control tools. The arrival of the biotechnology and genomics era gave hope to many that all sorts of new control tools would be developed. However, the reality is that most efforts have been limited to the development of transgenic crops with resistance to a few existing herbicides, which in fact is just another form of selectivity. Proteolysis‐targeting chimera (PROTAC) is a new technology developed to treat human diseases but that has potential for multiple applications in agriculture. This technology uses a small bait molecule linked to an E3 ligand. The 3‐dimensional structure of the bait favors physical interaction with a binding site in the target protein in a manner that allows E3 recruitment, ubiquitination and then proteasome‐mediated degradation. This system makes it possible to circumvent the need to find druggable targets because it can degrade structural proteins, transporters, transcription factors, and enzymes without the need to interact with the active site. PROTAC can help control herbicide‐resistant weeds as well as expand the number of biochemical targets that can be used for weed control. In the present article, we provide an overview of how PROTAC works and describe the possible applications for weed control as well as the challenges that this technology might face during development and implementation for field uses. © 2023 The Authors.Pest Management Sciencepublished by John Wiley & Sons Ltd on behalf of Society of Chemical Industry.
more »
« less
- Award ID(s):
- 2040582
- PAR ID:
- 10462141
- Publisher / Repository:
- Wiley Blackwell (John Wiley & Sons)
- Date Published:
- Journal Name:
- Pest Management Science
- Volume:
- 80
- Issue:
- 2
- ISSN:
- 1526-498X
- Format(s):
- Medium: X Size: p. 262-266
- Size(s):
- p. 262-266
- Sponsoring Org:
- National Science Foundation
More Like this
-
-
Global herbicide-resistant weed populations continue rising due to selection pressures exerted by herbicides. Despite this, herbicides continue to be farmers’ preferred weed-control method due to cost and efficiency relative to physical or biological methods. However, weeds developing resistance to herbicides not only challenges crop production but also threatens ecosystem services by disrupting biodiversity, reducing soil health, and impacting water quality. Our objective was to develop a simulation model that captures the feedback between weed population dynamics, agricultural management, profitability, and farmer decision-making processes that interact in unique ways to reinforce herbicide resistance in weeds. After calibration to observed data and evaluation by subject matter experts, we tested alternative agronomic, mechanical, or intensive management strategies to evaluate their impact on weed population dynamics. Results indicated that standalone practices enhanced farm profitability in the short term but lead to substantial adverse ecological outcomes in the long term, indicated by elevated herbicide resistance (e.g., harm to non-target species, disrupting natural ecosystem functions). The most management-intensive test yielded the greatest weed control and farm profit, albeit with elevated residual resistant seed bank levels. We discuss these findings in both developed and developing-nation contexts. Future work requires greater connectivity of farm management and genetic-resistance models that currently remain disconnected mechanistically.more » « less
-
Abstract Public concern regarding the use of herbicides in urban areas (e.g., golf courses, parks, lawns) is increasing. Thus, there is a need for alternative methods for weed control that are safe for the public, effective against weeds, and yet selective to turfgrass and other desirable species. New molecular tools such as ribonucleic acid interference (RNAi) have the potential to meet all those requirements, but before these technologies can be implemented, it is critical to understand the perceptions of key stakeholders to facilitate adoption as well as regulatory processes. With this in mind, turfgrass system managers, such as golf course superintendents and lawn care providers, were surveyed to gain insight into the perception and potential adoption of RNAi technology for weed management. Based on survey results, turfgrass managers believe that cost of weed management and time spent managing weeds are the main challenges faced in their fields. When considering new weed management tools, survey respondents were most concerned about cost, efficacy, and efficiency of a new product. Survey respondents were also optimistic toward RNAi for weed management and would either use this technology in their own fields or be willing to conduct research to develop RNAi herbicides. Although respondents believed that the general public would have some concerns about this technology, they did not believe this to be the most important factor for them when choosing new weed management tools. The need for new herbicides to balance weed control challenges and public demands is a central factor for turfgrass managers’ willingness to use RNAi-based weed control in turfgrass systems. They believe their clientele will be accepting of RNAi tools, although further research is needed to investigate how a wider range of stakeholders perceive RNAi tools for turfgrass management more broadly.more » « less
-
Abstract Weedy rice is a close relative of cultivated rice that devastates rice productivity worldwide. In the southern United States, two distinct strains have been historically predominant, but the 21stcentury introduction of hybrid rice and herbicide resistant rice technologies has dramatically altered the weedy rice selective landscape. Here, we use whole-genome sequences of 48 contemporary weedy rice accessions to investigate the genomic consequences of crop-weed hybridization and selection for herbicide resistance. We find that population dynamics have shifted such that most contemporary weeds are now crop-weed hybrid derivatives, and that their genomes have subsequently evolved to be more like their weedy ancestors. Haplotype analysis reveals extensive adaptive introgression of cultivated alleles at the resistance geneALS, but also uncovers evidence for convergent molecular evolution in accessions with no signs of hybrid origin. The results of this study suggest a new era of weedy rice evolution in the United States.more » « less
-
null (Ed.)With over 65% of agronomic crops under no-till in Pennsylvania, herbicides are relied on for weed management. To lessen the environmental impact and selection pressure for herbicide resistance, we conducted a nine-year experiment to test herbicide reduction practices in a dairy crop rotation at Rock Springs, PA. The rotation included soybean (Glycine max L.) – corn (Zea mays L.) - 3-year alfalfa (Medicago sativa L.) - canola (Brassica napus L.). The following practices were used to reduce herbicide inputs: i. banding residual herbicides over corn and soybean rows and using high-residue inter-row cultivation; ii. seeding a small grain companion crop with alfalfa; iii. plowing once in six years to terminate the perennial forage. These practices were compared with standard herbicide-based weed management (SH) in continuous no-till. We hypothesized: i. There would be more weed biomass in the reduced herbicide treatment (RH), ii. leading to more weeds in RH over time, but iii. the added weed pressure would not affect yield iv. or differences in net return. We sampled weed biomass in soybean, corn, and the first two forage years. In corn and soybean, weed biomass was often greater in RH than SH and increased over the years in the RH treatments. In the forage, weed biomass did not always differ between treatments. Yield and differences in net return were similar in most crops and years. Results suggest that weed management with reduced herbicide inputs supplemented with an integrated approach can be effective but may lead to more weeds over time.more » « less
