Population divergence is often quantified using phenotypic variation. However, because sensory abilities are more difficult to discern, we have little information on the plasticity and rate of sensory change between different environments. The Mexican tetra (
- Award ID(s):
- 1933076
- NSF-PAR ID:
- 10471495
- Publisher / Repository:
- Frontiers
- Date Published:
- Journal Name:
- Frontiers in Ecology and Evolution
- Volume:
- 11
- ISSN:
- 2296-701X
- Format(s):
- Medium: X
- Sponsoring Org:
- National Science Foundation
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null (Ed.)Abstract Identifying the genetic factors that underlie complex traits is central to understanding the mechanistic underpinnings of evolution. Cave-dwelling Astyanax mexicanus populations are well adapted to subterranean life and many populations appear to have evolved troglomorphic traits independently, while the surface-dwelling populations can be used as a proxy for the ancestral form. Here we present a high-resolution, chromosome-level surface fish genome, enabling the first genome-wide comparison between surface fish and cavefish populations. Using this resource, we performed quantitative trait locus (QTL) mapping analyses and found new candidate genes for eye loss such as dusp26 . We used CRISPR gene editing in A. mexicanus to confirm the essential role of a gene within an eye size QTL, rx3 , in eye formation. We also generated the first genome-wide evaluation of deletion variability across cavefish populations to gain insight into this potential source of cave adaptation. The surface fish genome reference now provides a more complete resource for comparative, functional and genetic studies of drastic trait differences within a species.more » « less
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Animals inhabiting subterranean environments tend to evolve a constellation of ‘regressive’ and ‘constructive’ features. Regressive traits like vision and pigmentation are reduced or lost in derived organisms. In contrast, constructive traits like non-visual sensation, are commonly augmented and evolving under strong selection. Numerous studies have examined the genetic, developmental and molecular bases for regressive traits, while constructive traits have received less attention. A key constructive sensory feature in cave animals is the gustatory system which is likely useful for animals living in complete darkness, given the need to secure food for survival. Interestingly, despite having been studied for decades in the Mexican tetra, Astyanax mexicanus , much remains unknown regarding the biological basis, and adaptive relevance, of taste system evolution in cave morphs. Here, we present a brief review of taste system research in this system, conducted over the past ~90 years. We underscore key differences in gustation between cave and surface fish that reside at the levels of anatomy, perception and behavior. From this review, we sought to identify key knowledge gaps in our understanding of constructive taste system evolution. Future studies will provide further insights to the nature of constructive trait evolution by determining if constructive and regressive traits evolve through similar or different genetic and developmental mechanisms, and provide an essential case study for examining convergence of constructive traits across geographically distinct populations.more » « less
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Abstract Extreme environments often result in the evolution of dramatic adaptive features. The Mexican tetra,
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Abstract Studying how different genotypes respond to environmental variation is essential to understand the genetic basis of adaptation. The Mexican tetra,
Astyanax mexicanus , has cave and surface‐dwelling morphotypes that have adapted to entirely different environments in the wild, and are now successfully maintained in lab conditions. While this has enabled the identification of genetic adaptations underlying a variety of physiological processes, few studies have directly compared morphotypes between lab‐reared and natural populations. Such comparative approaches could help dissect the varying effects of environment and morphotype, and determine the extent to which phenomena observed in the lab are generalizable to conditions in the field. To this end, we take a transcriptomic approach to compare the Pachón cavefish and their surface fish counterparts in their natural habitats and the lab environment. We identify key changes in expression of genes implicated in metabolism and physiology between groups of fish, suggesting that morphotype (surface or cave) and environment (natural or lab) both alter gene expression. We find gene expression differences between cave and surface fish in their natural habitats are much larger than differences in expression between morphotypes in the lab environment. However, lab‐raised cave and surface fish still exhibit numerous gene expression changes, supporting genetically encoded changes in livers of this species. From this, we conclude that a controlled laboratory environment may serve as an ideal setting to study the genetic underpinnings of metabolic and physiological differences between the cavefish and surface fish. -
Abstract Evolution in similar environments often leads to convergence of behavioral and anatomical traits. A classic example of convergent trait evolution is the reduced traits that characterize many cave animals: reduction or loss of pigmentation and eyes. While these traits have evolved many times, relatively little is known about whether these traits repeatedly evolve through the same or different molecular and developmental mechanisms. The small freshwater fish,
Astyanax mexicanus , provides an opportunity to investigate the repeated evolution of cave traits.A. mexicanus exists as two forms, a sighted, surface‐dwelling form and at least 29 populations of a blind, cave‐dwelling form that initially develops eyes that subsequently degenerate. We compared eye morphology and the expression of eye regulatory genes in developing surface fish and two independently evolved cavefish populations, Pachón and Molino. We found that many of the previously described molecular and morphological alterations that occur during eye development in Pachón cavefish are also found in Molino cavefish. However, for many of these traits, the Molino cavefish have a less severe phenotype than Pachón cavefish. Further, cave–cave hybrid fish have larger eyes and lenses during early development compared with fish from either parental population, suggesting that some different changes underlie eye loss in these two populations. Together, these data support the hypothesis that these two cavefish populations evolved eye loss independently, yet through some of the same developmental and molecular mechanisms.