skip to main content
US FlagAn official website of the United States government
dot gov icon
Official websites use .gov
A .gov website belongs to an official government organization in the United States.
https lock icon
Secure .gov websites use HTTPS
A lock ( lock ) or https:// means you've safely connected to the .gov website. Share sensitive information only on official, secure websites.


Title: Shedding light on dark taxa in sky‐island Appalachian leaf litter: Assessing patterns of endemicity using large‐scale, voucher‐based barcoding
Abstract Developing systematic conservation plans depends on a wealth of information on a region's biodiversity. For ‘dark taxa' such as arthropods, such data are usually very incomplete and in most cases left out from assessments.Sky islands are important and often fragile biodiversity hotspots. Southern Appalachian high‐elevation spruce–fir forests represent a particularly threatened sky‐island ecosystem, hosting numerous endemic and threatened species, but their arthropods remain understudied.Here we use voucher‐based megabarcoding to explore genetic differentiation among leaf‐litter arthropod communities of these highlands, and to examine the extent to which they represent dispersed communities of more or less coherent species, manageable as a distributed unit. We assembled a dataset comprising more than 6000 COI sequences representing diverse arthropod groups to assess species richness and sharing across peaks and ranges. Comparisons were standardised across taxa using automated species delimitation, measuring endemism levels by putative species.Species richness was high, with sites hosting from 86 to 199 litter arthropod species (not including mites or myriapods). Community profiles suggest that around one fourth of these species are unique to single sky islands and more than one third of all species are limited to a particular range. Across major taxa, endemicity was lowest in Araneae, and highest in neglected groups like Isopoda, Pseudoscorpionida, Protura and Diplura.Southern Appalachian sky islands of spruce–fir habitat host significantly distinct leaf‐litter arthropod communities, with high levels of local endemicity. This is the first work to provide such a clear picture of peak and range uniqueness for a taxonomically broad sample. Ensuring the protection of a sizeable fraction of high‐elevation litter species richness will therefore require attention at a relatively fine spatial scale.  more » « less
Award ID(s):
1916263
PAR ID:
10472394
Author(s) / Creator(s):
 ;  
Publisher / Repository:
Wiley-Blackwell
Date Published:
Journal Name:
Insect Conservation and Diversity
Volume:
17
Issue:
1
ISSN:
1752-458X
Format(s):
Medium: X Size: p. 16-30
Size(s):
p. 16-30
Sponsoring Org:
National Science Foundation
More Like this
  1. Elevation gradients provide a wealth of habitats for a wide variety of organisms. The southern Appalachian Mountains in eastern United States are known for their high biodiversity and rates of endemism in arthropods, including in high-elevation leaf-litter taxa that are often found nowhere else on earth. Trechus Clairville (Coleoptera: Carabidae) is a genus of litter inhabitants with a near-global distribution and over 50 Appalachian species. These span two subgenera, Trechus s. str. and Microtrechus Jeannel, largely restricted to north and south of the Asheville basin, respectively. Understanding the diversification of these 3–5 mm flightless beetles through geological time can provide insights into how the litter-arthropod community has responded to historical environments, and how they may react to current and future climate change. We identified beetles morphologically and sequenced six genes to reconstruct a phylogeny of the Appalachian Trechus. We confirmed the Asheville Basin as a biogeographical barrier with a split between the north and south occurring towards the end of the Pliocene. Finer scale biogeography, including mountain-range occupancy, was not a reliable indication of relatedness, with group ranges overlapping and many instances of species-, species group-, and subgeneric sympatry. This may be because of the recent divergence between modern species and species groups. Extensive taxonomic revision of the group is required for Trechus to be useful as a bioindicator, but their high population density and speciose nature make them worth additional time and resources. 
    more » « less
  2. Summary Nitrogen (N2)‐fixing moss microbial communities play key roles in nitrogen cycling of boreal forests. Forest type and leaf litter inputs regulate moss abundance, but how they control moss microbiomes and N2‐fixation remains understudied. We examined the impacts of forest type and broadleaf litter on microbial community composition and N2‐fixation rates ofHylocomium splendensandPleurozium schreberi.We conducted a moss transplant and leaf litter manipulation experiment at three sites with paired paper birch (Betula neoalaskana) and black spruce (Picea mariana) stands in Alaska. We characterized bacterial communities using marker gene sequencing, determined N2‐fixation rates using stable isotopes (15N2) and measured environmental covariates.Mosses native to and transplanted into spruce stands supported generally higher N2‐fixation and distinct microbial communities compared to similar treatments in birch stands. High leaf litter inputs shifted microbial community composition for both moss species and reduced N2‐fixation rates forH. splendens, which had the highest rates. N2‐fixation was positively associated with several bacterial taxa, including cyanobacteria.The moss microbiome and environmental conditions controlled N2‐fixation at the stand and transplant scales. Predicted shifts from spruce‐ to deciduous‐dominated stands will interact with the relative abundances of mosses supporting different microbiomes and N2‐fixation rates, which could affect stand‐level N inputs. 
    more » « less
  3. Abstract: The highest elevations of the southern Appalachians host a distinct type of forest, and with that comes a distinctive arthropod fauna. The arthropod species living in the leaf litter of the forest floor are particularly diverse, with numerous high elevation endemics. Yet, most of the litter fauna has received little taxonomic attention. We have intensively sampled and thoroughly DNA barcoded these arthropod communities, and have found that each peak tends to host a highly distinctive community, with a third or more of the species endemic to a site. Comparing communities from four peaks in the Smokies to other high elevation sites in the southern Appalachians reveals more than half of the litter arthropod species to be found nowhere else. 
    more » « less
  4. Abstract Ecological restoration often targets plant community recovery, but restoration success may depend on the recovery of a complex web of biotic interactions to maintain biodiversity and promote ecosystem services. Specifically, management that drives resource availability, such as seeding richness and provenance, may alter species interactions across multiple trophic levels. Using experimentally seeded prairies, we examine three key groups—plants, pollinators and goldenrod crab spiders (Misumena vatia, predators of pollinators)—to understand the effects of species richness and admixture seed sourcing of restoration seed mixtures on multitrophic interactions.Working with prairie plants, we experimentally manipulated seed mix richness and the number of seed source regions (single‐source region or admixture seed sourcing). In each experimental prairie, we surveyed floral abundance and richness, pollinator visitation and plant–M. vatiainteractions.A high richness seed mix increased floral abundance when seeds were sourced from a single geographic region, and floral abundance strongly increased pollinator visitation,M. vatiaabundance and prey capture. Seeding richness and admixture seed sourcing of the seed mixture did not affect floral species richness, but floral species richness increased pollinator visitation.Pollinators interacted with different floral communities across seeding treatments, indicating a shift in visited floral species with restoration practices.Synthesis and applications. Long‐term success in prairie restoration requires the restoration of plant–arthropod interactions. We provide evidence that seed mix richness and admixture seed sourcing affect arthropod floral associations, but effective restoration of plant–arthropod interactions should consider total floral resource availability. Incorporating a food web perspective in restoration will strengthen approaches to whole ecosystem restoration. 
    more » « less
  5. Abstract We are far from knowing all species living on the planet. Understanding biodiversity is demanding and requires time and expertise. Most groups are understudied given problems of identifying and delimiting species. DNA barcoding emerged to overcome some of the difficulties in identifying species. Its limitations derive from incomplete taxonomic knowledge and the lack of comprehensive DNA barcode libraries for so many taxonomic groups. Here, we evaluate how useful barcoding is for identifying arthropods from highly diverse leaf litter communities in the southern Appalachian Mountains (USA). We used 3 reference databases and several automated classification methods on a data set including several arthropod groups. Acari, Araneae, Collembola, Coleoptera, Diptera, and Hymenoptera were well represented, showing different performances across methods and databases. Spiders performed the best, with correct identification rates to species and genus levels of ~50% across databases. Springtails performed poorly, no barcodes were identified to species or genus. Other groups showed poor to mediocre performance, from around 3% (mites) to 20% (beetles) correctly identified barcodes to species, but also with some false identifications. In general, BOLD-based identification offered the best identification results but, in all cases except spiders, performance is poor, with less than a fifth of specimens correctly identified to genus or species. Our results indicate that the soil arthropod fauna is still insufficiently documented, with many species unrepresented in DNA barcode libraries. More effort toward integrative taxonomic characterization is needed to complete our reference libraries before we can rely on DNA barcoding as a universally applicable identification method. 
    more » « less