Abstract Microbes are the drivers of soil phosphorus (P) cycling in terrestrial ecosystems; however, the role of soil microbes in mediating P cycling in P‐rich soils during primary succession remains uncertain. This study examined the impacts of bacterial community structure (diversity and composition) and its functional potential (absolute abundances of P‐cycling functional genes) on soil P cycling along a 130‐year glacial chronosequence on the eastern Tibetan Plateau. Bacterial community structure was a better predictor of soil P fractions than P‐cycling genes along the chronosequence. After glacier retreat, the solubilization of inorganic P and the mineralization of organic P were significantly enhanced by increased bacterial diversity, changed interspecific interactions, and abundant species involved in soil P mineralization, thereby increasing P availability. Although 84% of P‐cycling genes were associated with organic P mineralization, these genes were more closely associated with soil organic carbon than with organic P. Bacterial carbon demand probably determined soil P turnover, indicating the dominant role of organic matter decomposition processes in P‐rich alpine soils. Moreover, the significant decrease in the complexity of the bacterial co‐occurrence network and the taxa‐gene‐P network at the later stage indicates a declining dominance of the bacterial community in driving soil P cycling with succession. Our results reveal that bacteria with a complex community structure have a prominent potential for biogeochemical P cycling in P‐rich soils during the early stages of primary succession.
more »
« less
Thermally reversible pattern formation in arrays of molecular rotors
In this work, we describe the development of a computational model for arrays of rotary DNA origami elements which can self-organize on a large scale and explore the interesting morphologies and order–disorder transition behavior of these systems.
more »
« less
- PAR ID:
- 10474514
- Publisher / Repository:
- Royal Society of Chemistry
- Date Published:
- Journal Name:
- Nanoscale
- Volume:
- 15
- Issue:
- 18
- ISSN:
- 2040-3364
- Page Range / eLocation ID:
- 8356 to 8365
- Format(s):
- Medium: X
- Sponsoring Org:
- National Science Foundation
More Like this
-
-
Abstract Fluorescence fluctuation spectroscopy (FFS) encompasses a bevy of techniques that involve analyzing fluorescence intensity fluctuations occurring due to fluorescently labeled molecules diffusing in and out of a microscope's focal region. Statistical analysis of these fluctuations may reveal the oligomerization (i.e., association) state of said molecules. We have recently developed a new FFS‐based method, termed Two‐Dimensional Fluorescence Intensity Fluctuation (2D FIF) spectrometry, which provides quantitative information on the size and stability of protein oligomers as a function of receptor concentration. This article describes protocols for employing FIF spectrometry to quantify the oligomerization of a membrane protein of interest, with specific instructions regarding cell preparation, image acquisition, and analysis of images given in detail. Application of the FIF Spectrometry Suite, a software package designed for applying FIF analysis on fluorescence images, is emphasized in the protocol. Also discussed in detail is the identification, removal, and/or analysis of inhomogeneous regions of the membrane that appear as bright spots. The 2D FIF approach is particularly suited to assess the effects of agonists and antagonists on the oligomeric size of membrane receptors of interest. © 2022 Wiley Periodicals LLC. Basic Protocol 1: Preparation of live cells expressing protein constructs Basic Protocol 2: Image acquisition and noise correction Basic Protocol 3: Drawing and segmenting regions of interest Basic Protocol 4: Calculating the molecular brightness and concentration of individual image segments Basic Protocol 5: Combining data subsets using a manual procedure (Optional) Alternate Protocol 1: Combining data subsets using the advanced FIF spectrometry suite (Optional; alternative to Basic Protocol 5) Basic Protocol 6: Performing meta‐analysis of brightness spectrograms Alternate Protocol 2: Performing meta‐analysis of brightness spectrograms (alternative to Basic Protocol 6) Basic Protocol 7: Spot extraction and analysis using a manual procedure or by writing a program (Optional) Alternate Protocol 3: Automated spot extraction and analysis (Optional; alternative to Protocol 7) Support Protocol: Monomeric brightness determinationmore » « less
-
Abstract We applied an integrative taxonomic framework to evaluate the systematics of the Neotropical Black-and-white Becard (Pachyramphus albogriseusSclater 1857). Combining phylogenomic (ultraconserved elements), morphological, and vocalization data, we confirmed that this species is polyphyletic; some individuals form a clade sister to P. polychopterus and should be afforded species rank as P. salviniRichmond 1899 (Slender-billed Becard), whereas the remaining subspecies of P. albogriseus (Broad-banded Becard) are sister to P. major. We found that P. salvini differs from P. albogriseus in song, color of the lores, wing-bar width, body size, and bill width. Whereas P. albogriseus occurs in montane forest in Costa Rica and Panama (ssp. ornatus) and along the eastern slope of the Andes from northern Venezuela to southern Peru (ssp. albogriseus), P. salvini is found in the lowlands from Pacific Colombia south to northwest Peru and in the Río Marañón drainage. The latter also occurs, possibly only seasonally, along the eastern slope of the Andes, where the two species’ ranges approach closely. We treat P. a. guayaquilensisZimmer 1936 as a junior synonym of P. salviniRichmond 1899, and P. a. coronatusPhelps and Phelps 1953 as a junior synonym of P. a. albogriseusSclater 1857. This study provides a striking example of a major problem for comparative biology: underestimated and mischaracterized diversity. We argue that there are likely many more cases like this awaiting discovery.more » « less
-
Aeolian dust deposition is an important phosphorus (P) input to terrestrial ecosystems, but its influence on P dynamics during long-term ecosystem development remains poorly understood. In this study, we characterized P speciation using P K-edge XANES spectroscopy in surface soils (0–15 cm, A horizon) and contemporary aeolian dust collected at each site of a 3000-ky volcanic soil chronosequence in a cool, semi-arid environment. Phosphorus speciation in dust was dominated by calcium-bound P (Ca-P; 54–74%), with 11–23% iron and aluminum-bound P [(Fe + Al)-P] and 7–25% organic P (Po). In soils, Po contributed 1–23% of total P, being greater in older soils; however, the proportions of Ca-P (16–39%) and (Fe + Al)-P (48–82%) fluctuated with increasing weathering over the soil chronosequence. These soil fluctuations resulted from the accumulation and preservation of alkaline aeolian dust during pedogenesis in the semi-arid climate, which significantly increased soil Ca-P while decreasing the total amounts and relative abundances of soil (Fe + Al)-P. We suggest that the effects of an aeolian dust input on soil P transformations are functions of the relative magnitude and chemical composition of the dust input and the soil weathering intensity. For a given source of dust, when the net dust flux is greater than the weathering rate, dust accumulates and thus alters the pattern of P transformations during pedogenesis; otherwise, the dust influence on soil P transformations is negligible. By accurately identifying the chemical nature of P pools, our work highlights the advantage of P K-edge XANES spectroscopy over chemical extractions in examining soil P dynamics, and demonstrates how dust inputs can modify the Walker and Syers model of pedogenic P transformations in semi-arid environments. Overall, this work provides a foundation for understanding how dust influences P cycling during soil and ecosystem development, and indicates that dust inputs and composition, and the soil weathering rate, all must be considered for developing integrated climate-biogeochemical models with predictive power in terrestrial ecosystems.more » « less
-
Aeolian dust deposition is an important phosphorus (P) input to terrestrial ecosystems, but its influence on P dynamics during long-term ecosystem development remains poorly understood. In this study, we characterized P speciation using P K-edge XANES spectroscopy in surface soils (0–15 cm, A horizon) and contemporary aeolian dust collected at each site of a 3000-ky volcanic soil chronosequence in a cool, semi-arid environment. Phosphorus speciation in dust was dominated by calcium-bound P (Ca-P; 54–74%), with 11–23% iron and aluminum-bound P [(Fe + Al)-P] and 7–25% organic P (Po). In soils, Po contributed 1–23% of total P, being greater in older soils; however, the proportions of Ca-P (16–39%) and (Fe + Al)-P (48–82%) fluctuated with increasing weathering over the soil chronosequence. These soil fluctuations resulted from the accumulation and preservation of alkaline aeolian dust during pedogenesis in the semi-arid climate, which significantly increased soil Ca-P while decreasing the total amounts and relative abundances of soil (Fe + Al)-P. We suggest that the effects of an aeolian dust input on soil P transformations are functions of the relative magnitude and chemical composition of the dust input and the soil weathering intensity. For a given source of dust, when the net dust flux is greater than the weathering rate, dust accumulates and thus alters the pattern of P transformations during pedogenesis; otherwise, the dust influence on soil P transformations is negligible. By accurately identifying the chemical nature of P pools, our work highlights the advantage of P K-edge XANES spectroscopy over chemical extractions in examining soil P dynamics, and demonstrates how dust inputs can modify the Walker and Syers model of pedogenic P transformations in semi-arid environments. Overall, this work provides a foundation for understanding how dust influences P cycling during soil and ecosystem development, and indicates that dust inputs and composition, and the soil weathering rate, all must be considered for developing integrated climate-biogeochemical models with predictive power in terrestrial ecosystems.more » « less
An official website of the United States government

