The grey wolf (
Among the three main divergent lineages of gray wolf (Canis lupus), the Holarctic lineage is the most widespread and best studied, particularly in North America and Europe. Less is known about Tibetan (also called Himalayan) and Indian wolf lineages in southern Asia, especially in areas surrounding Pakistan where all three lineages are thought to meet. Given the endangered status of the Indian wolf in neighboring India and unclear southwestern boundary of the Tibetan wolf range, we conducted mitochondrial and genome-wide sequencing of wolves from Pakistan and Kyrgyzstan. Sequences of the mitochondrial D-loop region of 81 wolves from Pakistan indicated contact zones between Holarctic and Indian lineages across the northern and western mountains of Pakistan. Reduced-representation genome sequencing of eight wolves indicated an east-to-west cline of Indian to Holarctic ancestry, consistent with a contact zone between these two lineages in Pakistan. The western boundary of the Tibetan lineage corresponded to the Ladakh region of India’s Himalayas with a narrow zone of admixture spanning this boundary from the Karakoram Mountains of northern Pakistan into Ladakh, India. Our results highlight the conservation significance of Pakistan’s wolf populations, especially the remaining populations in Sindh and Southern Punjab that represent the highly endangered Indian lineage.
more » « less- NSF-PAR ID:
- 10474851
- Publisher / Repository:
- Oxford University Press
- Date Published:
- Journal Name:
- Journal of Heredity
- ISSN:
- 0022-1503
- Format(s):
- Medium: X
- Sponsoring Org:
- National Science Foundation
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Abstract Canis lupus ) expanded its range across Holarctic regions during the late Pleistocene. Consequently, most grey wolves share recent (<100,000 years ago) maternal origins corresponding to a widespread Holarctic clade. However, two deeply divergent (200,000–700,000 years ago) mitochondrial clades are restricted, respectively, to the Indian subcontinent and the Tibetan Plateau, where remaining wolves are endangered. No genome‐wide analysis had previously included wolves corresponding to the mitochondrial Indian clade or attempted to parse gene flow and phylogeny. We sequenced four Indian and two Tibetan wolves and included 31 additional canid genomes to resolve the phylogenomic history of grey wolves. Genomic analyses revealed Indian and Tibetan wolves to be distinct from each other and from broadly distributed wolf populations corresponding to the mitochondrial Holarctic clade. Despite gene flow, which was reflected disproportionately in high‐recombination regions of the genome, analyses revealed Indian and Tibetan wolves to be basal to Holarctic grey wolves, in agreement with the mitochondrial phylogeny. In contrast to mitochondrial DNA, however, genomic findings suggest the possibility that the Indian wolf could be basal to the Tibetan wolf, a discordance potentially reflecting selection on the mitochondrial genome. Together, these findings imply that southern regions of Asia have been important centers for grey wolf evolution and that Indian and Tibetan wolves represent evolutionary significant units (ESUs). Further study is needed to assess whether these ESUs warrant recognition as distinct species. This question is especially urgent regarding the Indian wolf, which represents one of the world's most endangered wolf populations. -
Parsch, John (Ed.)Abstract Genetic introgression not only provides material for adaptive evolution but also confounds our understanding of evolutionary history. This is particularly true for canids, a species complex in which genome sequencing and analysis has revealed a complex history of admixture and introgression. Here, we sequence 19 new whole genomes from high-altitude Tibetan and Himalayan wolves and dogs and combine these into a larger data set of 166 whole canid genomes. Using these data, we explore the evolutionary history and adaptation of these and other canid lineages. We find that Tibetan and Himalayan wolves are closely related to each other, and that ∼39% of their nuclear genome is derived from an as-yet-unrecognized wolf-like lineage that is deeply diverged from living Holarctic wolves and dogs. The EPAS1 haplotype, which is present at high frequencies in Tibetan dog breeds and wolves and confers an adaptive advantage to animals living at high altitudes, was probably derived from this ancient lineage. Our study underscores the complexity of canid evolution and demonstrates how admixture and introgression can shape the evolutionary trajectories of species.more » « less
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Abstract Across eastern North America, glacial cycles of the Pleistocene drove episodic latitudinal range shifts by temperate species. Isolation of populations within low-latitude refugia during glacial maxima was enhanced by physiographic barriers, leading to patterns of phylogeographic differentiation that are shared across diverse taxa. Postglacial population expansion created opportunities for differentiated lineages to come into contact, with various potential population-genetic outcomes. Northern short-tailed shrews (Blarina brevicauda) exhibit three mitochondrial phylogroups that probably originated via glacial-age range restriction and isolation. We investigate the history of postglacial expansion and interlineage contact between historically isolated regional populations of B. brevicauda. Morphological differences between skulls of shrews representing a Western lineage and those representing Central and Eastern lineages are consistent with past subspecies delineations. However, we demonstrate broad range overlap between neighboring phylogroups across the Upper Peninsula and Lower Peninsula in Michigan. Further, incongruence between phylogroup association and morphology among individuals in Upper Peninsula populations suggests that genetic admixture between shrews representing the Western and Central groups has occurred in the past and may be ongoing. We show that across most cranial measurements, shrews within the contact zone are morphologically most similar to the Central group regardless of mitochondrial identity, but one measurement in these contact zone shrews (depth of skull) is more similar to that seen in the Western group. These results suggest that hybridization between historically isolated populations has resulted in the origin of a novel skull phenotype that is proportionally deeper, narrower, and shorter than those seen in core Western and Central populations.
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