skip to main content
US FlagAn official website of the United States government
dot gov icon
Official websites use .gov
A .gov website belongs to an official government organization in the United States.
https lock icon
Secure .gov websites use HTTPS
A lock ( lock ) or https:// means you've safely connected to the .gov website. Share sensitive information only on official, secure websites.

Explore Research Products in the PAR
It may take a few hours for recently added research products to appear in PAR search results.


Title: Topological Data Analysis for Multivariate Time Series Data
Over the last two decades, topological data analysis (TDA) has emerged as a very powerful data analytic approach that can deal with various data modalities of varying complexities. One of the most commonly used tools in TDA is persistent homology (PH), which can extract topological properties from data at various scales. The aim of this article is to introduce TDA concepts to a statistical audience and provide an approach to analyzing multivariate time series data. The application’s focus will be on multivariate brain signals and brain connectivity networks. Finally, this paper concludes with an overview of some open problems and potential application of TDA to modeling directionality in a brain network, as well as the casting of TDA in the context of mixed effect models to capture variations in the topological properties of data collected from multiple subjects.  more » « less
Award ID(s):
2010778
PAR ID:
10478239
Author(s) / Creator(s):
; ;
Publisher / Repository:
MDPI
Date Published:
Journal Name:
Entropy
Volume:
25
Issue:
11
ISSN:
1099-4300
Page Range / eLocation ID:
1509
Format(s):
Medium: X
Sponsoring Org:
National Science Foundation
More Like this
  1. ; ; (, Frontiers in Neuroinformatics)
    Topological data analysis (TDA) is increasingly recognized as a promising tool in the field of neuroscience, unveiling the underlying topological patterns within brain signals. However, most TDA related methods treat brain signals as if they were static, i.e., they ignore potential non-stationarities and irregularities in the statistical properties of the signals. In this study, we develop a novel fractal dimension-based testing approach that takes into account the dynamic topological properties of brain signals. By representing EEG brain signals as a sequence of Vietoris-Rips filtrations, our approach accommodates the inherent non-stationarities and irregularities of the signals. The application of our novel fractal dimension-based testing approach in analyzing dynamic topological patterns in EEG signals during an epileptic seizure episode exposes noteworthy alterations in total persistence across 0, 1, and 2-dimensional homology. These findings imply a more intricate influence of seizures on brain signals, extending beyond mere amplitude changes. 
    more » « less
  2. ; ; ; ; ; (, Network Neuroscience)
    Abstract Childhood maltreatment may adversely affect brain development and consequently influence behavioral, emotional, and psychological patterns during adulthood. In this study, we propose an analytical pipeline for modeling the altered topological structure of brain white matter in maltreated and typically developing children. We perform topological data analysis (TDA) to assess the alteration in the global topology of the brain white matter structural covariance network among children. We use persistent homology, an algebraic technique in TDA, to analyze topological features in the brain covariance networks constructed from structural magnetic resonance imaging and diffusion tensor imaging. We develop a novel framework for statistical inference based on the Wasserstein distance to assess the significance of the observed topological differences. Using these methods in comparing maltreated children with a typically developing control group, we find that maltreatment may increase homogeneity in white matter structures and thus induce higher correlations in the structural covariance; this is reflected in the topological profile. Our findings strongly suggest that TDA can be a valuable framework to model altered topological structures of the brain. The MATLAB codes and processed data used in this study can be found at https://github.com/laplcebeltrami/maltreated. 
    more » « less
  3. ; ; (, Mathematics)
    Topological data analysis (TDA) has proven to be a potent approach for extracting intricate topological structures from complex and high-dimensional data. In this paper, we propose a TDA-based processing pipeline for analyzing multi-channel scalp EEG data. The pipeline starts with extracting both frequency and temporal information from the signals via the Hilbert–Huang Transform. The sequences of instantaneous frequency and instantaneous amplitude across all electrode channels are treated as approximations of curves in the high-dimensional space. TDA features, which represent the local topological structure of the curves, are further extracted and used in the classification models. Three sets of scalp EEG data, including one collected in a lab and two Brain–computer Interface (BCI) competition data, were used to validate the proposed methods, and compare with other state-of-art TDA methods. The proposed TDA-based approach shows superior performance and outperform the winner of the BCI competition. Besides BCI, the proposed method can also be applied to spatial and temporal data in other domains such as computer vision, remote sensing, and medical imaging. 
    more » « less
  4. ; ; ; ; (, Frontiers in Environmental Science)
    null (Ed.)
    Topological data analysis (TDA) combines concepts from algebraic topology, machine learning, statistics, and data science which allow us to study data in terms of their latent shape properties. Despite the use of TDA in a broad range of applications, from neuroscience to power systems to finance, the utility of TDA in Earth science applications is yet untapped. The current study aims to offer a new approach for analyzing multi-resolution Earth science datasets using the concept of data shape and associated intrinsic topological data characteristics. In particular, we develop a new topological approach to quantitatively compare two maps of geophysical variables at different spatial resolutions. We illustrate the proposed methodology by applying TDA to aerosol optical depth (AOD) datasets from the Goddard Earth Observing System, Version 5 (GEOS-5) model over the Middle East. Our results show that, contrary to the existing approaches, TDA allows for systematic and reliable comparison of spatial patterns from different observational and model datasets without regridding the datasets into common grids. 
    more » « less
  5. ; ; (, International Workshop on Big Data Reduction)
    An emerging method for data analysis is called Topological Data Analysis (TDA). TDA is based in the mathematical field of topology and examines the properties of spaces under continuous deformation. One of the key tools used for TDA is called persistent homology which considers the connectivity of points in a d-dimensional point cloud at different spatial resolutions to identify topological properties (holes, loops, and voids) in the space. Persistent homology then classifies the topological features by their persistence through the range of spatial connectivity. Unfortunately the memory and run-time complexity of computing persistent homology is exponential and current tools can only process a few thousand points in R3. Fortunately, the use of data reduction techniques enables persistent homology to be applied to much larger point clouds. Techniques to reduce the data range from random sampling of points to clustering the data and using the cluster centroids as the reduced data. While several data reduction approaches appear to preserve the large topological features present in the original point cloud, no systematic study comparing the efficacy of different data clustering techniques in preserving the persistent homology results has been performed. This paper explores the question of topology preserving data reductions and describes formally when and how topological features can be mischaracterized or lost by data reduction techniques. The paper also performs an experimental assessment of data reduction techniques and resilient effects on the persistent homology. In particular, data reduction by random selection is compared to cluster centroids extracted from different data clustering algorithms. 
    more » « less
  • Citation Formats
  • MLA
  • APA
  • Chicago
  • BibTeX
  • Save / Share this Record
  • Send to Email