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1. Loss of native herbivores triggers diversity decline of ephemeral plant communities

   https://doi.org/10.1111/jvs.13210  

   Fernández‐Murillo, María_del Pilar ; Alfaro, Fernando Daniel ; Craven, Dylan ; Gutiérrez, Julio Roberto ; Kelt, Douglas A ; Meserve, Peter L ; Troncoso, Alejandra J ( September 2023 , Journal of Vegetation Science)

   None (Ed.)

   Evaluate the temporal changes in species diversity, composition, and structure of ephemeral plant communities and the seed bank in response to long‐term herbivore exclusion over 11 years in plots with and without herbivores.

   North‐central Chile.

   We obtained information on ephemeral vegetation cover in August and September using the intercept point method and recorded seed abundance in April. The Bosque Fray Jorge National Park Long‐Term Socio‐Ecological Research (LTSER) provided these records covering 11 years (2009–2019). From the original experiment of 20 plots, we used eight plots divided into two treatments: four plots allowed free access to all herbivores (with herbivores), while the other four plots excluded herbivores (without herbivores).

   We found that Hill–Shannon diversity increased in plant communities with herbivores and a temporal increase in the cover of the dominant species,Plantago hispidula, under herbivore exclusion. In wet years, species richness and temporal turnover of plant communities increased independently of treatment. Although seed abundance differed among treatments and years, population structure remained constant over time and among treatments, suggesting that the seed bank acts as a buffer against shocks that modify plant community dynamics. Structural equation modeling revealed that precipitation, via its positive effects onPlantago hispidula, increases native plant richness to a greater extent than herbivores. However, in the absence of herbivores, precipitation directly affects native species richness. Moreover, we found that precipitation also influences the native species richness of the seed bank, both directly and indirectly, although its impacts exhibit a time lag.

   Our study demonstrates that the temporal dynamics of ephemeral plant communities and seed banks in semi‐arid ecosystems are strongly coupled to climate variability, highlighting the vulnerability of these communities to biodiversity loss and climate change.

    

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2. Long-Term Nutrient Enrichment of an Oligotroph-Dominated Wetland Increases Bacterial Diversity in Bulk Soils and Plant Rhizospheres

   https://doi.org/10.1128/mSphere.00035-20  

   Bledsoe, Regina B. ; Goodwillie, Carol ; Peralta, Ariane L. ( June 2020 , mSphere)

   Campbell, Barbara J. (Ed.)

   ABSTRACT In nutrient-limited conditions, plants rely on rhizosphere microbial members to facilitate nutrient acquisition, and in return, plants provide carbon resources to these root-associated microorganisms. However, atmospheric nutrient deposition can affect plant-microbe relationships by changing soil bacterial composition and by reducing cooperation between microbial taxa and plants. To examine how long-term nutrient addition shapes rhizosphere community composition, we compared traits associated with bacterial (fast-growing copiotrophs, slow-growing oligotrophs) and plant (C 3 forb, C 4 grass) communities residing in a nutrient-poor wetland ecosystem. Results revealed that oligotrophic taxa dominated soil bacterial communities and that fertilization increased the presence of oligotrophs in bulk and rhizosphere communities. Additionally, bacterial species diversity was greatest in fertilized soils, particularly in bulk soils. Nutrient enrichment (fertilized versus unfertilized) and plant association (bulk versus rhizosphere) determined bacterial community composition; bacterial community structure associated with plant functional group (grass versus forb) was similar within treatments but differed between fertilization treatments. The core forb microbiome consisted of 602 unique taxa, and the core grass microbiome consisted of 372 unique taxa. Forb rhizospheres were enriched in potentially disease-suppressive bacterial taxa, and grass rhizospheres were enriched in bacterial taxa associated with complex carbon decomposition. Results from this study demonstrate that fertilization serves as a strong environmental filter on the soil microbiome, which leads to distinct rhizosphere communities and can shift plant effects on the rhizosphere microbiome. These taxonomic shifts within plant rhizospheres could have implications for plant health and ecosystem functions associated with carbon and nitrogen cycling. IMPORTANCE Over the last century, humans have substantially altered nitrogen and phosphorus cycling. Use of synthetic fertilizer and burning of fossil fuels and biomass have increased nitrogen and phosphorus deposition, which results in unintended fertilization of historically low-nutrient ecosystems. With increased nutrient availability, plant biodiversity is expected to decline, and the abundance of copiotrophic taxa is anticipated to increase in bacterial communities. Here, we address how bacterial communities associated with different plant functional types (forb, grass) shift due to long-term nutrient enrichment. Unlike other studies, results revealed an increase in bacterial diversity, particularly of oligotrophic bacteria in fertilized plots. We observed that nutrient addition strongly determines forb and grass rhizosphere composition, which could indicate different metabolic preferences in the bacterial communities. This study highlights how long-term fertilization of oligotroph-dominated wetlands could alter diversity and metabolism of rhizosphere bacterial communities in unexpected ways. 

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3. Resuscitation of the microbial seed bank alters plant‐soil interactions

   https://doi.org/10.1111/mec.15932  

   Kuo, Venus ; Lehmkuhl, Brent K. ; Lennon, Jay T. ( May 2021 , Molecular Ecology)

   While microorganisms are recognized for driving belowground processes that influence the productivity and fitness of plant populations, the vast majority of bacteria and fungi in soil belong to a seed bank consisting of dormant individuals. However, plant performance may be affected by microbial dormancy through its effects on the activity, abundance, and diversity of soil microorganisms. To test how microbial seed banks influence plant‐soil interactions, we purified recombinant resuscitation promoting factor (Rpf), a bacterial protein that terminates dormancy. In a factorially designed experiment, we then applied the Rpf to soil containing field mustard (Brassicarapa), an agronomically important plant species. Plant biomass was ~33% lower in the Rpf treatment compared to plants grown with an unmanipulated microbial seed bank. In addition, Rpf reduced soil respiration, decreased bacterial abundance, and increased fungal abundance. These effects of Rpf on plant performance were accompanied by shifts in bacterial community composition, which may have diluted mutualists or resuscitated pathogens. Our findings suggest that changes in microbial seed banks may influence the magnitude and direction of plant‐soil feedbacks in ways that affect above‐ and belowground biodiversity and function.

    

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4. Site‐specific responses of foliar fungal microbiomes to nutrient addition and herbivory at different spatial scales

   https://doi.org/10.1002/ece3.5711  

   Lumibao, Candice_Y ; Borer, Elizabeth_T ; Condon, Bradford ; Kinkel, Linda ; May, Georgiana ; Seabloom, Eric_W ( October 2019 , Ecology and Evolution)

   The plant microbiome can affect host function in many ways and characterizing the ecological factors that shape endophytic (microbes living inside host plant tissues) community diversity is a key step in understanding the impacts of environmental change on these communities. Phylogenetic relatedness among members of a community offers a way of quantifying phylogenetic diversity of a community and can provide insight into the ecological factors that shape endophyte microbiomes. We examined the effects of experimental nutrient addition and herbivory exclusion on the phylogenetic diversity of foliar fungal endophyte communities of the grass speciesAndropogon gerardiiat four sites in the Great Plains of the central USA. Using amplicon sequencing, we characterized the effects of fertilization and herbivory on fungal community phylogenetic diversity at spatial scales that spanned within‐host to between sites across the Great Plains. Despite increasing fungal diversity and richness, at larger spatial scales, fungal microbiomes were composed of taxa showing random phylogenetic associations. Phylogenetic diversity did not differ systematically when summed across increasing spatial scales from a few meters within plots to hundreds of kilometers among sites. We observed substantial shifts in composition across sites, demonstrating distinct but similarly diverse fungal communities were maintained within sites across the region. In contrast, at the scale of within leaves, fungal communities tended to be comprised of closely related taxa regardless of the environment, but there were no shifts in phylogenetic composition among communities. We also found that nutrient addition (fertilization) and herbivory have varying effects at different sites. These results suggest that the direction and magnitude of the outcomes of environmental modifications likely depend on the spatial scale considered, and can also be constrained by regional site differences in microbial diversity and composition.

    

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5. Trait-Based Investigation Reveals Patterns of Community Response to Nutrient Enrichment in Coastal Mesic Grassland

   https://doi.org/10.3390/d13010019  

   Brown, Joseph K. ; Zinnert, Julie C. ( January 2021 , Diversity)

   null (Ed.)

   Despite recent advances, we still do not understand how chronic nutrient enrichment impacts coastal plant community structure and function. We aimed to clarify such impacts by testing for differences in ecosystem productivity and multiple community metrics in response to fertilization. We established plots in 2015 consisting of control (C), nitrogen (N), phosphorus (P), and nitrogen + phosphorus (NP) treatments in a mid-Atlantic coastal grassland. In 2017 we collected aboveground biomass, functional traits, and species abundance for each plot. Our findings indicate a synergistic co-limitation, such that NP plots were more productive than all other treatments. A combination of traits responsible for competition and nutrient uptake (i.e., height and δ15N) caused trait-based divergence of N and NP plots from C and P plots. Functional trait-based composition patterns differed from species composition and lifeform abundance patterns, highlighting complexities of community response to nutrient enrichment. While trait-based functional alpha-diversity did not differ among nutrient treatments, it was positively correlated with biomass production, suggesting nutrients may impact functional alpha-diversity indirectly through increased productivity. Increased functional alpha-diversity could be a mechanism of co-existence emerging as productivity increases. These results have important implications for understanding how plant communities in low-productivity coastal systems are altered by fertilization. 

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