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1. Composite substrates for coral larval settlement and reef restoration based on natural hydraulic lime and inorganic strontium and magnesium compounds

   https://doi.org/10.1016/j.ecoleng.2024.107236  

   Yus, J; Nixon, EN; Li, J; Noriega_Gimenez, J; Bennett, M-J; Flores, D; Marhaver, KL; Wegley_Kelly, L; Espinosa-Marzal, RM; Wagoner_Johnson, AJ (May 2024, Ecological Engineering)

   NA (Ed.)

   Coral reefs face unprecedented threats from climate change and human activities, making reef restoration increasingly important for the preservation of marine biodiversity and the sustainability of coastal communities. One promising restoration method relies on coral breeding and larval settlement, but this approach requires further innovation to achieve high rates of settlement and survival. In this study, we built on our previous work engineering lime mortar-based coral settlement substrates by investigating three different compositions of a natural hydraulic lime (NHL) base material as well as composite NHL substrates containing alkaline earth metals. These materials were tested with larvae of three reef-building Caribbean coral species: Orbicella faveolata (Mountainous star coral), Diploria labyrinthiformis (Grooved brain coral), and Colpophyllia natans (Boulder brain coral). We found that the base material composition, including its silicate and calcium carbonate (CaCO3) content, as well as the addition of the inorganic additives strontium carbonate (SrCO3), magnesium carbonate (MgCO3), and magnesium sulfate (MgSO4), all influenced coral larval settlement rates. Overall, NHL formulations with lower concentrations of silicate and higher concentrations of calcium, strontium, and magnesium carbonates significantly increased coral settlement. Further, when dissolved ions of magnesium and strontium were added to seawater, both had a significant effect on larval motility, with magnesium promoting settlement and metamorphosis in C. natans larvae, supporting the observation that these additives are also bioactive when incorporated into substrates. Our results demonstrate the potential benefits of incorporating specific inorganic ion additives such as Mg2+ and Sr2+ into substrates to facilitate early coral life history processes including settlement and metamorphosis. Further, our results highlight the importance of optimizing multiple aspects of coral substrate design, including material composition, to promote settlement and survival in coral propagation and reef restoration. 

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2. Biomimetic chemical microhabitats enhance coral settlement

   https://doi.org/10.1016/j.tibtech.2025.03.019  

   Kundu, Samapti; Potenti, Simone; Quinlan, Zachary A; Willard, Helena; Chen, Justin; Noritake, Timothy; Levy, Natalie; Karimi, Zahra; Jorissen, Hendrikje; Hancock, Joshua R; et al (May 2025, Trends in Biotechnology)

   Anthropogenic stressors pose substantial threats to the existence of coral reefs. Achieving successful coral recruitment stands as a bottleneck in reef restoration and hybrid reef engineering efforts. Here, we enhance coral settlement through the development of biomimetic microhabitats that replicate the chemical landscape of healthy reefs. We engineered a soft biomaterial, SNAP-X, comprising silica nanoparticles (NPs), biopolymers, and algal exometabolites, to enrich reef microhabitats with bioactive molecules from crustose coralline algae (CCA). Coral settlement was enhanced over 20-fold using SNAP-X-coated substrates compared with uncoated controls. SNAP-X is designed to release chemical signals slowly (>1 month) under natural seawater conditions, and can be rapidly applied to natural reef substrates via photopolymerization, facilitating the light-assisted 3D printing of microengineered habitats. We anticipate that these biomimetic chemical microhabitats will be widely used to augment coral settlement on degraded reefs and to support ecosystem processes on hybrid reefs. 

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3. Distinguishing the molecular diversity, nutrient content, and energetic potential of exometabolomes produced by macroalgae and reef-building corals

   https://doi.org/10.1073/pnas.2110283119  

   Wegley Kelly, Linda; Nelson, Craig E.; Petras, Daniel; Koester, Irina; Quinlan, Zachary A.; Arts, Milou G.I.; Nothias, Louis-Felix; Comstock, Jacqueline; White, Brandie M.; Hopmans, Ellen C.; et al (February 2022, Proceedings of the National Academy of Sciences)

   Metabolites exuded by primary producers comprise a significant fraction of marine dissolved organic matter, a poorly characterized, heterogenous mixture that dictates microbial metabolism and biogeochemical cycling. We present a foundational untargeted molecular analysis of exudates released by coral reef primary producers using liquid chromatography–tandem mass spectrometry to examine compounds produced by two coral species and three types of algae (macroalgae, turfing microalgae, and crustose coralline algae [CCA]) from Mo’orea, French Polynesia. Of 10,568 distinct ion features recovered from reef and mesocosm waters, 1,667 were exuded by producers; the majority (86%) were organism specific, reflecting a clear divide between coral and algal exometabolomes. These data allowed us to examine two tenets of coral reef ecology at the molecular level. First, stoichiometric analyses show a significantly reduced nominal carbon oxidation state of algal exometabolites than coral exometabolites, illustrating one ecological mechanism by which algal phase shifts engender fundamental changes in the biogeochemistry of reef biomes. Second, coral and algal exometabolomes were differentially enriched in organic macronutrients, revealing a mechanism for reef nutrient-recycling. Coral exometabolomes were enriched in diverse sources of nitrogen and phosphorus, including tyrosine derivatives, oleoyl-taurines, and acyl carnitines. Exometabolites of CCA and turf algae were significantly enriched in nitrogen with distinct signals from polyketide macrolactams and alkaloids, respectively. Macroalgal exometabolomes were dominated by nonnitrogenous compounds, including diverse prenol lipids and steroids. This study provides molecular-level insights into biogeochemical cycling on coral reefs and illustrates how changing benthic cover on reefs influences reef water chemistry with implications for microbial metabolism. 

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4. Soundscape enrichment increases larval settlement rates for the brooding coral Porites astreoides

   https://doi.org/10.1098/rsos.231514  

   Aoki, Nadège; Weiss, Benjamin; Jézéquel, Youenn; Zhang, Weifeng Gordon; Apprill, Amy; Mooney, T Aran (March 2024, Royal Society Open Science)

   The_Royal_Society_Publishing (Ed.)

   Coral reefs, hubs of global biodiversity, are among the world’s most imperilled habitats. Healthy coral reefs are characterized by distinctive soundscapes; these environments are rich with sounds produced by fishes and marine invertebrates. Emerging evidence suggests these sounds can be used as orientation and settlement cues for larvae of reef animals. On degraded reefs, these cues may be reduced or absent, impeding the success of larval settlement, which is an essential process for the maintenance and replenishment of reef populations. Here, in a field-based study, we evaluated the effects of enriching the soundscape of a degraded coral reef to increase coral settlement rates.Porites astreoideslarvae were exposed to reef sounds using a custom solar-powered acoustic playback system.Porites astreoidessettled at significantly higher rates at the acoustically enriched sites, averaging 1.7 times (up to maximum of seven times) more settlement compared with control reef sites without acoustic enrichment. Settlement rates decreased with distance from the speaker but remained higher than control levels at least 30 m from the sound source. These results reveal that acoustic enrichment can facilitate coral larval settlement at reasonable distances, offering a promising new method for scientists, managers and restoration practitioners to rebuild coral reefs. 

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5. Metabolomic profiles of stony coral species from the Dry Tortugas National Park display inter- and intraspecies variation

   https://doi.org/10.1128/msystems.00856-24  

   Deutsch, Jessica M; Demko, Alyssa M; Jaiyesimi, Olakunle A; Foster, Gabriel; Kindler, Adelaide; Pitts, Kelly A; Vekich, Tessa; Williams, Gareth J; Walker, Brian K; Paul, Valerie J; et al (December 2024, mSystems)

   van_der_Hooft, Justin_J J (Ed.)

   ABSTRACT Coral reefs are experiencing unprecedented loss in coral cover due to increased incidence of disease and bleaching events. Thus, understanding mechanisms of disease susceptibility and resilience, which vary by species, is important. In this regard, untargeted metabolomics serves as an important hypothesis-building tool enabling the delineation of molecular factors underlying disease susceptibility or resilience. In this study, we characterize metabolomes of four species of visually healthy stony corals, includingMeandrina meandrites,Orbicella faveolata,Colpophyllia natans, andMontastraea cavernosa, collected at least a year before stony coral tissue loss disease reached the Dry Tortugas, Florida, and demonstrate that both symbiont and host-derived biochemical pathways vary by species. Metabolomes ofMeandrina meandritesdisplayed minimal intraspecies variability and the highest biological activity against coral pathogens when compared to other species in this study. The application of advanced metabolite annotation methods enabled the delineation of several pathways underlying interspecies variability. Specifically, endosymbiont-derived vitamin E family compounds, betaine lipids, and host-derived acylcarnitines were among the top predictors of interspecies variability. Since several metabolite features that contributed to inter- and intraspecies variation are synthesized by the endosymbiotic Symbiodiniaceae, which could be a major source of these compounds in corals, our data will guide further investigations into these Symbiodiniaceae-derived pathways. IMPORTANCEPrevious research profiling gene expression, proteins, and metabolites produced during thermal stress have reported the importance of endosymbiont-derived pathways in coral bleaching resistance. However, our understanding of interspecies variation in these pathways among healthy corals and their role in diseases is limited. We surveyed the metabolomes of four species of healthy corals with differing susceptibilities to the devastating stony coral tissue loss disease and applied advanced annotation approaches in untargeted metabolomics to determine the interspecies variation in host and endosymbiont-derived pathways. Using this approach, we propose the survey of immune markers such as vitamin E family compounds, acylcarnitines, and other metabolites to infer their role in resilience to coral diseases. As time-resolved multi-omics datasets are generated for disease-impacted corals, our approach and findings will be valuable in providing insight into the mechanisms of disease resistance. 

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