skip to main content
US FlagAn official website of the United States government
dot gov icon
Official websites use .gov
A .gov website belongs to an official government organization in the United States.
https lock icon
Secure .gov websites use HTTPS
A lock ( lock ) or https:// means you've safely connected to the .gov website. Share sensitive information only on official, secure websites.

Explore Research Products in the PAR
It may take a few hours for recently added research products to appear in PAR search results.


Title: Haplotypes at the sorghum ARG4 and ARG5NLR loci confer resistance to anthracnose
SUMMARY Sorghum anthracnose caused by the fungusColletotrichum sublineola(Cs) is a damaging disease of the crop. Here, we describe the identification ofANTHRACNOSE RESISTANCE GENES(ARG4andARG5) encoding canonical nucleotide‐binding leucine‐rich repeat (NLR) receptors.ARG4andARG5are dominant resistance genes identified in the sorghum lines SAP135 and P9830, respectively, that show broad‐spectrum resistance toCs. Independent genetic studies using populations generated by crossing SAP135 and P9830 with TAM428, fine mapping using molecular markers, comparative genomics and gene expression studies determined thatARG4andARG5are resistance genes againstCsstrains. Interestingly,ARG4andARG5are both located within clusters of duplicate NLR genes at linked loci separated by ~1 Mb genomic region. SAP135 and P9830 each carry only one of theARGgenes while having the recessive allele at the second locus. Only two copies of theARG5candidate genes were present in the resistant P9830 line while five non‐functional copies were identified in the susceptible line. The resistant parents and their recombinant inbred lines carrying eitherARG4orARG5are resistant to strains Csgl1 and Csgrg suggesting that these genes have overlapping specificities. The role ofARG4andARG5in resistance was validated through sorghum lines carrying independent recessive alleles that show increased susceptibility.ARG4andARG5are located within complex loci displaying interesting haplotype structures and copy number variation that may have resulted from duplication. Overall, the identification of anthracnose resistance genes with unique haplotype stucture provides a foundation for genetic studies and resistance breeding.  more » « less
Award ID(s):
1916893
PAR ID:
10480814
Author(s) / Creator(s):
 ;  ;  ;  ;  ;  ;  ;  ;  ;  
Publisher / Repository:
Wiley-Blackwell
Date Published:
Journal Name:
The Plant Journal
Volume:
118
Issue:
1
ISSN:
0960-7412
Format(s):
Medium: X Size: p. 106-123
Size(s):
p. 106-123
Sponsoring Org:
National Science Foundation
More Like this
  1. ; ; ; ; ; ; (, The Plant Journal)
    SUMMARY Sorghum is an important food and feed crop globally; its production is hampered by anthracnose disease caused by the fungal pathogenColletotrichum sublineola(Cs). Here, we report identification and characterization ofANTHRACNOSE RESISTANCE GENE 2(ARG2) encoding a nucleotide‐binding leucine‐rich repeat (NLR) protein that confers race‐specific resistance toCsstrains.ARG2is one of a cluster of severalNLRgenes initially identified in the sorghum differential line SC328C that is resistant to someCsstrains. This cluster shows structural and copy number variations in different sorghum genotypes. Different sorghum lines carrying independentARG2alleles provided the genetic validation for the identity of theARG2gene.ARG2expression is induced byCs, and chitin inducesARG2expression in resistant but not in susceptible lines. ARG2‐mediated resistance is accompanied by higher expression of defense and secondary metabolite genes at early stages of infection, and anthocyanin and zeatin metabolisms are upregulated in resistant plants. Interestingly, ARG2 localizes to the plasma membrane when transiently expressed inNicotiana benthamiana. Importantly,ARG2plants produced higher shoot dry matter than near‐isogenic lines carrying the susceptible allele suggesting an absence of anARG2associated growth trade‐off. Furthermore, ARG2‐mediated resistance is stable at a wide range of temperatures. Our observations open avenues for resistance breeding and for dissecting mechanisms of resistance. 
    more » « less
  2. ; ; ; ; ; (, Physiologia Plantarum)
    ABSTRACT Sorghum (Sorghum bicolor) plays a critical role in global agriculture, serving as a staple food source and contributing significantly to various industries. However, sorghum cultivation faces significant challenges, particularly from pests like the sugarcane aphid (SCA), which can cause substantial damage to crops. In this study, we investigated the role of the caffeoyl coenzyme‐AO‐methyltransferase (CCoAOMT) gene in sorghum defense against SCA. Feeding by SCA induced the expression of theSbCCoAOMTgene, which is involved in the monolignol biosynthesis pathway. Aphid no‐choice and choice bioassays revealed thatSbCCoAOMToverexpression in sorghum resulted in reduced SCA reproduction and decreased aphid settling, respectively, compared to wild‐type (RTx430) plants. Furthermore, electrical penetration graph (EPG) studies revealed thatSbCCoAOMToverexpression restricts aphid feeding from the sieve elements. SCA feeding also induced the accumulation of lignin in sorghum wild‐type andSbCCoAOMToverexpression plants. Moreover, artificial diet aphid feeding bioassays with hydroxycinnamic acids, ferulic and sinapic acids, showed direct adverse effects on SCA reproduction. Our findings highlight the potential of genetic modification to enhance sorghum resistance to SCA and emphasize the importance of lignin‐related genes in plant defense mechanisms. This study offers valuable insights into developing aphid‐resistant sorghum varieties and suggests avenues for further research on enhancing plant defenses against biotic stresses. 
    more » « less
  3. ; ; ; ; ; ; ; ; ; ; et al (, G3: Genes, Genomes, Genetics)
    Abstract Goss's wilt, caused by the Gram-positive actinobacterium Clavibacter nebraskensis, is an important bacterial disease of maize. The molecular and genetic mechanisms of resistance to the bacterium, or, in general, Gram-positive bacteria causing plant diseases, remain poorly understood. Here, we examined the genetic basis of Goss's wilt through differential gene expression, standard genome-wide association mapping (GWAS), extreme phenotype (XP) GWAS using highly resistant (R) and highly susceptible (S) lines, and quantitative trait locus (QTL) mapping using 3 bi-parental populations, identifying 11 disease association loci. Three loci were validated using near-isogenic lines or recombinant inbred lines. Our analysis indicates that Goss's wilt resistance is highly complex and major resistance genes are not commonly present. RNA sequencing of samples separately pooled from R and S lines with or without bacterial inoculation was performed, enabling identification of common and differential gene responses in R and S lines. Based on expression, in both R and S lines, the photosynthesis pathway was silenced upon infection, while stress-responsive pathways and phytohormone pathways, namely, abscisic acid, auxin, ethylene, jasmonate, and gibberellin, were markedly activated. In addition, 65 genes showed differential responses (up- or down-regulated) to infection in R and S lines. Combining genetic mapping and transcriptional data, individual candidate genes conferring Goss's wilt resistance were identified. Collectively, aspects of the genetic architecture of Goss's wilt resistance were revealed, providing foundational data for mechanistic studies. 
    more » « less
  4. ; ; ; ; (, BMC Genomics)
    Abstract BackgroundThe sugarcane aphid (SCA;Melanaphis sacchari) has emerged as a key pest on sorghum in the United States that feeds from the phloem tissue, drains nutrients, and inflicts physical damage to plants. Previously, it has been shown that SCA reproduction was low and high on sorghum SC265 and SC1345 plants, respectively, compared to RTx430, an elite sorghum male parental line (reference line). In this study, we focused on identifying the defense-related genes that confer resistance to SCA at early and late time points in sorghum plants with varied levels of SCA resistance. ResultsWe used RNA-sequencing approach to identify the global transcriptomic responses to aphid infestation on RTx430, SC265, and SC1345 plants at early time points 6, 24, and 48 h post infestation (hpi) and after extended period of SCA feeding for 7 days. Aphid feeding on the SCA-resistant line upregulated the expression of 3827 and 2076 genes at early and late time points, respectively, which was relatively higher compared to RTx430 and SC1345 plants. Co-expression network analysis revealed that aphid infestation modulates sorghum defenses by regulating genes corresponding to phenylpropanoid metabolic pathways, secondary metabolic process, oxidoreductase activity, phytohormones, sugar metabolism and cell wall-related genes. There were 187 genes that were highly expressed during the early time of aphid infestation in the SCA-resistant line, including genes encoding leucine-rich repeat (LRR) proteins, ethylene response factors, cell wall-related, pathogenesis-related proteins, and disease resistance-responsive dirigent-like proteins. At 7 days post infestation (dpi), 173 genes had elevated expression levels in the SCA-resistant line and were involved in sucrose metabolism, callose formation, phospholipid metabolism, and proteinase inhibitors. ConclusionsIn summary, our results indicate that the SCA-resistant line is better adapted to activate early defense signaling mechanisms in response to SCA infestation because of the rapid activation of the defense mechanisms by regulating genes involved in monolignol biosynthesis pathway, oxidoreductase activity, biosynthesis of phytohormones, and cell wall composition. This study offers further insights to better understand sorghum defenses against aphid herbivory. 
    more » « less
  5. ; ; ; ; ; ; (, The Plant Journal)
    SUMMARY Photosynthetic organisms must cope with rapid fluctuations in light intensity. Nonphotochemical quenching (NPQ) enables the dissipation of excess light energy as heat under high light conditions, whereas its relaxation under low light maximizes photosynthetic productivity. We quantified variation in NPQ kinetics across a large sorghum (Sorghum bicolor) association panel in four environments, uncovering significant genetic control for NPQ. A genome‐wide association study (GWAS) confidently identified three unique regions in the sorghum genome associated with NPQ and suggestive associations in an additional 61 regions. We detected strong signals from the sorghum ortholog ofArabidopsis thaliana Suppressor Of Variegation 3(SVR3) involved in plastid–nucleus signaling. By integrating GWAS results for NPQ across maize (Zea mays) and sorghum‐association panels, we identified a second gene,Non‐yellowing 1(NYE1), originally studied by Gregor Mendel in pea (Pisum sativum) and involved in the degradation of photosynthetic pigments in light‐harvesting complexes. Analysis ofnye1insertion alleles inA. thalianaconfirmed the effect of this gene on NPQ kinetics in eudicots. We extended our comparative genomics GWAS framework across the entire maize and sorghum genomes, identifying four additional loci involved in NPQ kinetics. These results provide a baseline for increasing the accuracy and speed of candidate gene identification for GWAS in species with high linkage disequilibrium. 
    more » « less
  • Citation Formats
  • MLA
  • APA
  • Chicago
  • BibTeX
  • Save / Share this Record
  • Send to Email