Abstract The three dimensional organization of genomes remains mostly unknown due to their high degree of condensation. Biophysical studies predict that condensation promotes the topological entanglement of chromatin fibers and the inhibition of function. How organisms balance between functionally active genomes and a high degree of condensation remains to be determined. Here we hypothesize that the Rabl configuration, characterized by the attachment of centromeres and telomeres to the nuclear envelope, helps to reduce the topological entanglement of chromosomes. To test this hypothesis we developed a novel method to quantify chromosome entanglement complexity in 3D reconstructions obtained from Chromosome Conformation Capture (CCC) data. Applying this method to published data of the yeast genome, we show that computational models implementing the attachment of telomeres or centromeres alone are not sufficient to obtain the reduced entanglement complexity observed in 3D reconstructions. It is only when the centromeres and telomeres are attached to the nuclear envelope (i.e. the Rabl configuration) that the complexity of entanglement of the genome is comparable to that of the 3D reconstructions. We therefore suggest that the Rabl configuration is an essential player in the simplification of the entanglement of chromatin fibers.
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BIOTIC INTERACTIONS BETWEEN CONULARIIDS AND EPIBIONTS FROM THE SILURIAN WAUKESHA BIOTA
ABSTRACT Here we describe an epibiont association between conulariids and holdfast producers, with attachment scars resembling those of the tubular epibiont, Sphenothallus, from the Silurian (late Telychian Series) Brandon Bridge Formation, Wisconsin. The conulariid population represents the most abundant sessile organisms in the Waukesha Biota and consists of two species, Conularia niagarensisHall, 1852 and Metaconularia cf. manni (Roy, 1935). Attachment scars present on the conulariid test offer a unique glimpse into the paleoecology of this Silurian benthic assemblage. However, body fossils of the attached epibiont are scarce and have not been observed attached or near conulariid specimens. This study evaluates the identity and paleoecological relationship between the conulariids and their enigmatic epibionts. Statistical analyses of attachment trace size, frequency, and distribution on the conulariid test gives insight to the nature of their symbiotic relationship. Our results did not find any significant support for a parasitic relationship. However, commensalism cannot be ruled out and serves as an alternative explanation for the relationship between these two organisms.
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- Award ID(s):
- 1917031
- PAR ID:
- 10482712
- Publisher / Repository:
- BioONE Digital Library
- Date Published:
- Journal Name:
- PALAIOS
- Volume:
- 37
- Issue:
- 11
- ISSN:
- 0883-1351
- Page Range / eLocation ID:
- 691 to 699
- Format(s):
- Medium: X
- Sponsoring Org:
- National Science Foundation
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