skip to main content


Title: An Iterative Penalized Least Squares Approach to Sparse Canonical Correlation Analysis
Abstract

It is increasingly interesting to model the relationship between two sets of high-dimensional measurements with potentially high correlations. Canonical correlation analysis (CCA) is a classical tool that explores the dependency of two multivariate random variables and extracts canonical pairs of highly correlated linear combinations. Driven by applications in genomics, text mining, and imaging research, among others, many recent studies generalize CCA to high-dimensional settings. However, most of them either rely on strong assumptions on covariance matrices, or do not produce nested solutions. We propose a new sparse CCA (SCCA) method that recasts high-dimensional CCA as an iterative penalized least squares problem. Thanks to the new iterative penalized least squares formulation, our method directly estimates the sparse CCA directions with efficient algorithms. Therefore, in contrast to some existing methods, the new SCCA does not impose any sparsity assumptions on the covariance matrices. The proposed SCCA is also very flexible in the sense that it can be easily combined with properly chosen penalty functions to perform structured variable selection and incorporate prior information. Moreover, our proposal of SCCA produces nested solutions and thus provides great convenient in practice. Theoretical results show that SCCA can consistently estimate the true canonical pairs with an overwhelming probability in ultra-high dimensions. Numerical results also demonstrate the competitive performance of SCCA.

 
more » « less
Award ID(s):
1617691 1613154
NSF-PAR ID:
10486237
Author(s) / Creator(s):
;
Publisher / Repository:
Oxford University Press
Date Published:
Journal Name:
Biometrics
Volume:
75
Issue:
3
ISSN:
0006-341X
Format(s):
Medium: X Size: p. 734-744
Size(s):
["p. 734-744"]
Sponsoring Org:
National Science Foundation
More Like this
  1. Summary

    Variable selection plays an important role in high dimensional statistical modelling which nowadays appears in many areas and is key to various scientific discoveries. For problems of large scale or dimensionality p, accuracy of estimation and computational cost are two top concerns. Recently, Candes and Tao have proposed the Dantzig selector using L1-regularization and showed that it achieves the ideal risk up to a logarithmic factor log(p). Their innovative procedure and remarkable result are challenged when the dimensionality is ultrahigh as the factor log(p) can be large and their uniform uncertainty principle can fail. Motivated by these concerns, we introduce the concept of sure screening and propose a sure screening method that is based on correlation learning, called sure independence screening, to reduce dimensionality from high to a moderate scale that is below the sample size. In a fairly general asymptotic framework, correlation learning is shown to have the sure screening property for even exponentially growing dimensionality. As a methodological extension, iterative sure independence screening is also proposed to enhance its finite sample performance. With dimension reduced accurately from high to below sample size, variable selection can be improved on both speed and accuracy, and can then be accomplished by a well-developed method such as smoothly clipped absolute deviation, the Dantzig selector, lasso or adaptive lasso. The connections between these penalized least squares methods are also elucidated.

     
    more » « less
  2. SUMMARY

    We introduce a new finite-element (FE) based computational framework to solve forward and inverse elastic deformation problems for earthquake faulting via the adjoint method. Based on two advanced computational libraries, FEniCS and hIPPYlib for the forward and inverse problems, respectively, this framework is flexible, transparent and easily extensible. We represent a fault discontinuity through a mixed FE elasticity formulation, which approximates the stress with higher order accuracy and exposes the prescribed slip explicitly in the variational form without using conventional split node and decomposition discrete approaches. This also allows the first order optimality condition, that is the vanishing of the gradient, to be expressed in continuous form, which leads to consistent discretizations of all field variables, including the slip. We show comparisons with the standard, pure displacement formulation and a model containing an in-plane mode II crack, whose slip is prescribed via the split node technique. We demonstrate the potential of this new computational framework by performing a linear coseismic slip inversion through adjoint-based optimization methods, without requiring computation of elastic Green’s functions. Specifically, we consider a penalized least squares formulation, which in a Bayesian setting—under the assumption of Gaussian noise and prior—reflects the negative log of the posterior distribution. The comparison of the inversion results with a standard, linear inverse theory approach based on Okada’s solutions shows analogous results. Preliminary uncertainties are estimated via eigenvalue analysis of the Hessian of the penalized least squares objective function. Our implementation is fully open-source and Jupyter notebooks to reproduce our results are provided. The extension to a fully Bayesian framework for detailed uncertainty quantification and non-linear inversions, including for heterogeneous media earthquake problems, will be analysed in a forthcoming paper.

     
    more » « less
  3. null (Ed.)
    We study the supervised clustering problem under the two-component anisotropic Gaussian mixture model in high dimensions in the non-asymptotic setting. We first derive a lower and a matching upper bound for the minimax risk of clustering in this framework. We also show that in the high-dimensional regime, the linear discriminant analysis (LDA) classifier turns out to be sub-optimal in a minimax sense. Next, we characterize precisely the risk of regularized supervised least squares classifiers under $\ell_2$ regularization. We deduce the fact that the interpolating solution (0 training error solution) may outperform the regularized classifier, under mild assumptions on the covariance structure of the noise. Our analysis also shows that interpolation can be robust to corruption in the covariance of the noise when the signal is aligned with the ``clean'' part of the covariance, for the properly defined notion of alignment. To the best of our knowledge, this peculiar phenomenon has not yet been investigated in the rapidly growing literature related to interpolation. We conclude that interpolation is not only benign but can also be optimal and in some cases robust. 
    more » « less
  4. Abstract

    A generic out-of-sample error estimate is proposed for $M$-estimators regularized with a convex penalty in high-dimensional linear regression where $(\boldsymbol{X},\boldsymbol{y})$ is observed and the dimension $p$ and sample size $n$ are of the same order. The out-of-sample error estimate enjoys a relative error of order $n^{-1/2}$ in a linear model with Gaussian covariates and independent noise, either non-asymptotically when $p/n\le \gamma $ or asymptotically in the high-dimensional asymptotic regime $p/n\to \gamma ^{\prime}\in (0,\infty )$. General differentiable loss functions $\rho $ are allowed provided that the derivative of the loss is 1-Lipschitz; this includes the least-squares loss as well as robust losses such as the Huber loss and its smoothed versions. The validity of the out-of-sample error estimate holds either under a strong convexity assumption, or for the L1-penalized Huber M-estimator and the Lasso under a sparsity assumption and a bound on the number of contaminated observations. For the square loss and in the absence of corruption in the response, the results additionally yield $n^{-1/2}$-consistent estimates of the noise variance and of the generalization error. This generalizes, to arbitrary convex penalty and arbitrary covariance, estimates that were previously known for the Lasso.

     
    more » « less
  5. We study the stochastic optimization of canonical correlation analysis (CCA), whose objective is nonconvex and does not decouple over training samples. Although several stochastic gradient based optimization algorithms have been recently proposed to solve this problem, no global convergence guarantee was provided by any of them. Inspired by the alternating least squares/power iterations formulation of CCA, and the shift-and-invert preconditioning method for PCA, we propose two globally convergent meta-algorithms for CCA, both of which transform the original problem into sequences of least squares problems that need only be solved approximately. We instantiate the meta-algorithms with state-of-the-art SGD methods and obtain time complexities that significantly improve upon that of previous work. Experimental results demonstrate their superior performance. 
    more » « less