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1. Soil mycorrhizal and nematode diversity vary in response to bioenergy crop identity and fertilization

   https://doi.org/10.1111/gcbb.12460  

   Emery, Sarah M.; Reid, Matthew L.; Bell-Dereske, Lukas; Gross, Katherine L. (June 2017, GCB Bioenergy)

   The mandate by the Energy Independence and Security Act of 2007 to increase renewable fuel production in the USA has resulted in extensive research into the sustainability of perennial bioenergy crops such as switchgrass (Panicum virgatum) and miscanthus (Miscanthus× giganteus). Perennial grassland crops have been shown to support greater aboveground biodiversity and ecosystem function than annual crops. However, management considerations, such as what crop to plant or whether to use fertilizer, may alter belowground diversity and ecosystem functioning associated with these grasslands as well. In this study, we compared crop type (switchgrass or miscanthus) and nitrogen fertilization effects on arbuscular mycorrhizal fungal (AMF) and soil nematode abundance, activity, and diversity in a long-term experiment. We quantified AMF root colonization, AMF extra-radical hyphal length, soil glomalin concentrations, AMF richness and diversity, plant-parasitic nematode abundance, and nematode family richness and diversity in each treatment. Mycorrhizal activity and diversity were higher with switchgrass than with miscanthus, leading to higher potential soil carbon contributions via increased hyphal growth and glomalin production. Plant-parasitic nematode (PPN) abundance was 2.3 ×  higher in miscanthus plots compared to switchgrass, mostly due to increases in dagger nematodes (Xiphinema). The higher PPN abundance in miscanthus may be a consequence of lower AMF in this species, as AMF can provide protection against PPN through a variety of mechanisms. Nitrogen fertilization had minor negative effects on AMF and nematode diversity associated with these crops. Overall, we found that crop type and fertilizer application associated with perennial bioenergy cropping systems can have detectable effects on the diversity and composition of soil communities, which may have important consequences for the ecosystem services provided by these systems. 

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2. Above- and belowground plant mercury dynamics in a salt marsh estuary in Massachusetts, USA

   https://doi.org/10.5194/bg-21-1461-2024  

   Wang, Ting; Du, Buyun; Forbrich, Inke; Zhou, Jun; Polen, Joshua; Sunderland, Elsie M; Balcom, Prentiss H; Chen, Celia; Obrist, Daniel (January 2024, Biogeosciences)

   Abstract. Estuaries are a conduit of mercury (Hg) from watersheds to the coastal ocean, and salt marshes play an important role in coastal Hg cycling. Hg cycling in upland terrestrial ecosystems has been well studied, but processes in densely vegetated salt marsh ecosystems are poorly characterized. We investigated Hg dynamics in vegetation and soils in the Plum Island Sound estuary in Massachusetts, USA, and specifically assessed the role of marsh vegetation for Hg deposition and turnover. Monthly quantitative harvesting of aboveground biomass showed strong linear seasonal increases in Hg associated with plants, with a 4-fold increase in Hg concentration and an 8-fold increase in standing Hg mass from June (3.9 ± 0.2 µg kg−1 and 0.7 ± 0.4 µg m−2, respectively) to November (16.2 ± 2.0 µg kg−1 and 5.7 ± 2.1 µg m−2, respectively). Hg did not increase further in aboveground biomass after plant senescence, indicating physiological controls of vegetation Hg uptake in salt marsh plants. Hg concentrations in live roots and live rhizomes were 11 and 2 times higher than concentrations in live aboveground biomass, respectively. Furthermore, live belowground biomass Hg pools (Hg in roots and rhizomes, 108.1 ± 83.4 µg m−2) were more than 10 times larger than peak standing aboveground Hg pools (9.0 ± 3.3 µg m−2). A ternary mixing model of measured stable Hg isotopes suggests that Hg sources in marsh aboveground tissues originate from about equal contributions of root uptake (∼ 35 %), precipitation uptake (∼ 33 %), and atmospheric gaseous elemental mercury (GEM) uptake (∼ 32 %). These results suggest a more important role of Hg transport from belowground (i.e., roots) to aboveground tissues in salt marsh vegetation than upland vegetation, where GEM uptake is generally the dominant Hg source. Roots and soils showed similar isotopic signatures, suggesting that belowground tissue Hg mostly derived from soil uptake. Annual root turnover results in large internal Hg recycling between soils and plants, estimated at 58.6 µg m−2 yr−1. An initial mass balance of Hg indicates that the salt marsh presently serves as a small net Hg sink for environmental Hg of 5.2 µg m−2 yr−1. 

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3. Independent effects of tree diversity on aboveground and soil carbon pools after six years of experimental afforestation

   https://doi.org/10.1002/eap.3042  

   Bryant, Reb L; Kothari, Shan; Cavender‐Bares, Jeannine; Curran, Stephanie J; Grossman, Jake J; Hobbie, Sarah E; Nash, Charlotte; Neumiller, Grace C; See, Craig R (October 2024, Ecological Applications)

   Abstract Planting diverse forests has been proposed as a means to increase long‐term carbon (C) sequestration while providing many co‐benefits. Positive tree diversity–productivity relationships are well established, suggesting more diverse forests will lead to greater aboveground C sequestration. However, the effects of tree diversity on belowground C storage have the potential to either complement or offset aboveground gains, especially during early stages of afforestation when potential exists for large losses in soil C due to soil decomposition. Thus, experimental tests of the effects of planted tree biodiversity on changes in whole‐ecosystem C balance are needed. Here, we present changes in above‐ and belowground C pools 6 years after the initiation of the Forests and Biodiversity experiment (FAB1), consisting of high‐density plots of one, two, five, or 12 tree species planted in a common garden. The trees included a diverse range of native species, including both needle‐leaf conifer and broadleaf angiosperm species, and both ectomycorrhizal and arbuscular mycorrhizal species. We quantified the effects of species richness, phylogenetic diversity, and functional diversity on aboveground woody C, as well as on mineral soil C accumulation, fine root C, and soil aggregation. Surprisingly, changes in aboveground woody C pools were uncorrelated to changes in mineral soil C pools, suggesting that variation in soil C accumulation was not driven by the quantity of plant litter inputs. Aboveground woody C accumulation was strongly driven by species and functional identity; however, plots with higher species richness and functional diversity accumulated more C in aboveground wood than expected based on monocultures. We also found weak but significant effects of tree species richness, identity, and mycorrhizal type on soil C accumulation. To assess the role of the microbial community in mediating these effects, we further compared changes in soil C pools to phospholipid fatty acid (PLFA) profiles. Soil C pools and accumulation were more strongly correlated with specific microbial clades than with total microbial biomass or plant diversity. Our results highlight rapidly emerging and microbially mediated effects of tree biodiversity on soil C storage in the early years of afforestation that are independent of gains in aboveground woody biomass. 

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4. Deep roots of Carex aquatilis have greater ammonium uptake capacity than shallow roots in peatlands following permafrost thaw

   https://doi.org/10.1007/s11104-021-04978-x  

   Albano, Lucas J.; Turetsky, Merritt R.; Mack, Michelle C.; Kane, Evan S. (May 2021, Plant and Soil)

   null (Ed.)

   Aims Climate warming in northern ecosystems is triggering widespread permafrost thaw, during which deep soil nutrients, such as nitrogen, could become available for biological uptake. Permafrost thaw shift frozen organic matter to a saturated state, which could impede nutrient uptake. We assessed whether soil nitrogen can be accessed by the deep roots of vascular plants in thermokarst bogs, potentially allowing for increases in primary productivity. Methods We conducted an ammonium uptake experiment on Carex aquatilis Wahlenb. roots excavated from thermokarst bogs in interior Alaska. Ammonium uptake capacity was compared between deep and shallow roots. We also quantified differences in root ammonium uptake capacity and plant size characteristics (plant aboveground and belowground biomass, maximum shoot height, and maximum root length) between the actively-thawing margin and the centre of each thermokarst bog as a proxy for time-following-thaw. Results Deep roots had greater ammonium uptake capacity than shallow roots, while rooting depth, but not belowground biomass, was positively correlated with aboveground biomass. Although there were no differences in aboveground biomass between the margin and centre, our findings suggest that plants can benefit from investing in the acquisition of resources near the vertical thaw front. Conclusions Our results suggest that deep roots of C. aquatilis can contribute to plant nitrogen uptake and are therefore able to tolerate anoxic conditions in saturated thermokarst bogs. This work furthers our understanding of how subarctic and wetland plants respond to warming and how enhanced plant biomass production might help offset ecosystem carbon release with future permafrost thaw. 

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5. Rapid differentiation of soil and root microbiomes in response to plant composition and biodiversity in the field

   https://doi.org/10.1038/s43705-023-00237-5  

   Burrill, Haley M.; Wang, Guangzhou; Bever, James D. (December 2023, ISME Communications)

   Abstract Research suggests that microbiomes play a major role in structuring plant communities and influencing ecosystem processes, however, the relative roles and strength of change of microbial components have not been identified. We measured the response of fungal, arbuscular mycorrhizal fungal (AMF), bacteria, and oomycete composition 4 months after planting of field plots that varied in plant composition and diversity. Plots were planted using 18 prairie plant species from three plant families (Poaceae, Fabaceae, and Asteraceae) in monoculture, 2, 3, or 6 species richness mixtures and either species within multiple families or one family. Soil cores were collected and homogenized per plot and DNA were extracted from soil and roots of each plot. We found that all microbial groups responded to the planting design, indicating rapid microbiome response to plant composition. Fungal pathogen communities were strongly affected by plant diversity. We identified OTUs from genera of putatively pathogenic fungi that increased with plant family, indicating likely pathogen specificity. Bacteria were strongly differentiated by plant family in roots but not soil. Fungal pathogen diversity increased with planted species richness, while oomycete diversity, as well as bacterial diversity in roots, decreased. AMF differentiation in roots was detected with individual plant species, but not plant family or richness. Fungal saprotroph composition differentiated between plant family composition in plots, providing evidence for decomposer home-field advantage. The observed patterns are consistent with rapid microbiome differentiation with plant composition, which could generate rapid feedbacks on plant growth in the field, thereby potentially influencing plant community structure, and influence ecosystem processes. These findings highlight the importance of native microbial inoculation in restoration. 

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