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1. Warming alters cascading effects of a dominant arthropod predator on fungal community composition in the Arctic

   https://doi.org/10.1128/mbio.00590-24  

   Koltz, Amanda M; Koyama, Akihiro; Wallenstein, Matthew (July 2024, mBio)

   Giovannoni, Stephen J; Weedon, James (Ed.)

   ABSTRACT Rapid climate change in the Arctic is altering microbial structure and function, with important consequences for the global ecosystem. Emerging evidence suggests organisms in higher trophic levels may also influence microbial communities, but whether warming alters these effects is unclear. Wolf spiders are dominant Arctic predators whose densities are expected to increase with warming. These predators have temperature-dependent effects on decomposition via their consumption of fungal-feeding detritivores, suggesting they may indirectly affect the microbial structure as well. To address this, we used a fully factorial mesocosm experiment to test the effects of wolf spider density and warming on litter microbial structure in Arctic tundra. We deployed replicate litter bags at the surface and belowground in the organic soil profile and analyzed the litter for bacterial and fungal community structure, mass loss, and nutrient characteristics after 2 and 14 months. We found there were significant interactive effects of wolf spider density and warming on fungal but not bacterial communities. Specifically, higher wolf spider densities caused greater fungal diversity under ambient temperature but lower fungal diversity under warming at the soil surface. We also observed interactive treatment effects on fungal composition belowground. Wolf spider density influenced surface bacterial composition, but the effects did not change with warming. These findings suggest a widespread predator can have indirect, cascading effects on litter microbes and that effects on fungi specifically shift under future expected levels of warming. Overall, our study highlights that trophic interactions may play important, albeit overlooked, roles in driving microbial responses to warming in Arctic terrestrial ecosystems. IMPORTANCEThe Arctic contains nearly half of the global pool of soil organic carbon and is one of the fastest warming regions on the planet. Accelerated decomposition of soil organic carbon due to warming could cause positive feedbacks to climate change through increased greenhouse gas emissions; thus, changes in ecological dynamics in this region are of global relevance. Microbial structure is an important driver of decomposition and is affected by both abiotic and biotic conditions. Yet how activities of soil-dwelling organisms in higher trophic levels influence microbial structure and function is unclear. In this study, we demonstrate that predicted changes in abundances of a dominant predator and warming interactively affect the structure of litter-dwelling fungal communities in the Arctic. These findings suggest predators may have widespread, indirect cascading effects on microbial communities, which could influence ecosystem responses to future climate change. 

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2. Rising global temperatures reduce soil microbial diversity over the long term

   https://doi.org/10.1073/pnas.2426200122  

   Sun, Yuan; Chen, Han_Y H; Chen, Xin; Hisano, Masumi; Chen, Xinli; Reich, Peter B (September 2025, Proceedings of the National Academy of Sciences)

   Soil microbial diversity is crucial to sustaining ecosystem productivity and improving carbon sequestration. Global temperature continues to rise, but how climate warming affects microbial diversity and its capacity to sequester soil organic carbon (SOC) remains uncertain. Here, by conducting a global meta-analysis with 251 paired observations from 102 studies, we showed that, on average, warming reduced bacterial and fungal diversity (measured by richness and Shannon index) by 16.0 and 19.7%, respectively, and SOC by 18.1%. The negative responses of both soil bacterial and fungal diversity to warming became more pronounced with increasing warming magnitude, experimental duration, and decreasing soil nitrogen availability. Under the worst-case climate warming scenario (2010 to 2070, 3.4 increase in °C), soil bacterial diversity and fungal diversity are projected to reduce by 56% and 81%, respectively, over 60 y. Importantly, in addition to the direct impact of warming on SOC, warming-induced declines in microbial diversity also contributed to SOC losses. We highlight that prolonged warming could substantially reduce soil microbial diversity and decrease SOC sequestration, accelerating future warming and underscoring the urgent need for decisive actions to mitigate global climate change. 

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3. Enhanced plant leaf P and unchanged soil P stocks after a quarter century of warming in the arctic tundra

   https://doi.org/10.1002/ecs2.3838  

   McLaren, Jennie R.; Buckeridge, Kate M. (November 2021, Ecosphere)

   Abstract Phosphorus (P) limits or co‐limits plant and microbial life in multiple ecosystems, including the arctic tundra. Although current global carbon (C) models focus on the coupling between soil nitrogen (N) and C, ecosystem P response to climate warming may also influence the global C cycle. Permafrost soils may see enhanced or reduced P availability under climate warming through multiple mechanisms including changing litter inputs through plant community change, changing plant–microbial dynamics, altered rates of mineralization of soil organic P through increased microbial activity, and newly exposed mineral‐bound P via deeper thaw. We investigated the effect of long‐term warming on plant leaf, multiple soil and microbial C, N, and P pools, and microbial extracellular enzyme activities, in Alaskan tundra plots underlain by permafrost. Here, we show that 25 yr of experimental summer warming increases community‐level plant leaf P through changing community composition to favour relatively P‐rich plant species. However, despite associated increases in P‐rich litter inputs, we found only a few responses in the belowground pools of P available for plant and microbial uptake, including a weak positive response for citric acid–extractable PO₄in the surface soil, a decrease in microbial biomass P, and no change in soil P (or C or N) stocks. This weak, neutral, or negative belowground P response to warming despite enhanced litter P inputs is consistent with a growing number of studies in the arctic tundra that find no long‐term response of soil C and N stocks to warming. 

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4. Long-term warming inverts the relationship between ecosystem function and microbial resource acquisition

   https://doi.org/10.1101/2024.10.23.619826  

   Shinfuku, Melissa S; DeAngelis, Kristen M (October 2024, bioRxiv)

   Abstract Soil microbial traits drive ecosystem functions, which can explain the positive correlation between microbial functional diversity and ecosystem function. However, microbial adaptation to climate change related warming stress can shift microbial traits with direct implications for soil carbon cycling. Here, we investigated how long-term warming affects the relationship between microbial trait diversity and ecosystem function. Soils were sampled after 24 years of +5°C warming alongside unheated control soils from the Harvard Forest Long-Term Ecological Research site. Ecosystem function was estimated from six different enzyme activities and microbial biomass. Functional diversity was calculated from metatranscriptomics sequencing, where reads were assigned to yield, acquisition, or stress trait categories. We found that in organic horizon soils, warming decreased the richness of acquisition-related traits. In the mineral soils, we observed that heated soils exhibited a negative relationship with the richness of acquisition-related traits. These results suggest that microbial communities exposed to long-term warming are shifting away from a resource acquisition life history strategy. 

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5. Substrate availability and not thermal acclimation controls microbial temperature sensitivity response to long‐term warming

   https://doi.org/10.1111/gcb.16544  

   Domeignoz‐Horta, Luiz A.; Pold, Grace; Erb, Hailey; Sebag, David; Verrecchia, Eric; Northen, Trent; Louie, Katherine; Eloe‐Fadrosh, Emiley; Pennacchio, Christa; Knorr, Melissa A.; et al (March 2023, Global Change Biology)

   Microbes are responsible for cycling carbon (C) through soils, and predicted changes in soil C stocks under climate change are highly sensitive to shifts in the mechanisms assumed to control the microbial physiological response to warming. Two mechanisms have been suggested to explain the long-­ term warming impact on microbial physiology: microbial thermal acclimation and changes in the quantity and quality of substrates available for microbial metabolism. Yet studies disentangling these two mechanisms are lacking. To resolve the drivers of changes in microbial physiology in response to long-­ term warming, we sampled soils from 13-­ and 28-­ year-­ old soil warming experiments in different seasons. We performed short-­ term laboratory incubations across a range of temperatures to measure the relationships between temperature sensitivity of physiology (growth, respiration, carbon use efficiency, and extracellular enzyme activity) and the chemical composition of soil organic matter. We observed apparent thermal acclimation of microbial respiration, but only in summer, when warming had exacerbated the seasonally-­ induced, already small dissolved organic matter pools. Irrespective of warming, greater quantity and quality of soil carbon increased the extracellular enzymatic pool and its temperature sensitivity. We propose that fresh litter input into the system seasonally cancels apparent thermal acclimation of C-­ cycling processes to decadal warming. Our findings reveal that long-term warming has indirectly affected microbial physiology via reduced C availability in this system, implying that earth system models including these negative feedbacks may be best suited to describe long-­ term warming effects on these soils. 

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