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1. Data from: Promoting success in thin layer sediment placement: effects of sediment grain size and amendments on salt marsh plant growth and greenhouse gas exchange

   https://doi.org/10.5061/dryad.xsj3tx9nx  

   Wilbur, Brittany; Raper, Kirk; Gray, Andrew; Mozdzer, Thomas; Watson, Elizabeth; University, Drexel (January 2023, Dryad)

   Thin layer sediment placement (TLP) is a method to mitigate factors resulting in loss of elevation and severe alteration of hydrology, such as sea level rise and anthropogenic modifications, and prolong the lifespan of drowning salt marshes. However, TLP success may vary due to plant stress associated with reductions in nutrient availability and hydrologic flushing or through the creation of acid sulfate soils. This study examined the influence of sediment grain size and soil amendments on plant growth, soil and porewater characteristics, and greenhouse gas exchange for three key US salt marsh plants: Spartina alterniflora, Spartina patens, and Salicornia pacifica. We found that bioavailable nitrogen concentrations (measured as extractable NH4+-N) and porewater pH and salinity were found to have an inverse relationship with grain size, while soil redox was more reducing in finer sediments. This suggests that utilizing finer sediments in TLP projects will result in a more reduced environment with higher nutrient availability, while larger grain-sized sediments will be better flushed and oxidized. We further found that grain size had a significant effect on vegetation biomass allocation and rates of gas exchange, although these effects were species-specific. We found that soil amendments (biochar and compost) did not subsidize plant growth but were associated with increases in soil respiration and methane emissions. Biochar amendments were additionally ineffective in ameliorating acid sulfate conditions. This study uncovers complex interactions between sediment type and vegetation, emphasizing limitations of soil amendments. The findings aid restoration project managers in making informed decisions regarding sediment type, target vegetation, and soil amendments for successful TLP projects. 

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2. Rice husk and charred husk amendments increase porewater and plant Si but water management determines grain As and Cd concentration

   https://doi.org/10.1007/s11104-022-05350-3  

   Linam, Franklin; Limmer, Matt A.; Tappero, Ryan; Seyfferth, Angelia L. (August 2022, Plant and Soil)

   Abstract Purpose Rice is a staple crop worldwide and a silicon (Si) hyperaccumulator with Si levels reaching 5–10% of its mass; this can result in desilication and Si-deficiency if plant residues are not managed correctly. Rice is also uniquely subject to arsenic (As) and cadmium (Cd) contamination depending on soil conditions. Our goal is to quantify the effects of rice husk (a Si-rich milling byproduct) amendments and different water management strategies on rice uptake of Si, As, and Cd. Methods We employed 4 husk amendment treatments: Control (no husk), Husk (untreated husk), Biochar (husk pyrolyzed at 450 °C), and CharSil (husk combusted at > 1000 °C). Each of these amendments was studied under nonflooded, alternate wetting and drying (AWD), and flooded water management in a pot study. Porewater chemistry and mature plant elemental composition were measured. Results Husk and Biochar treatments, along with flooding, increased porewater and plant Si. Vegetative tissue As decreased with increasing porewater Si, but grain As and plant Cd were primarily controlled by water management. Grain As and Cd were inversely correlated and are simultaneously minimized in a redox potential (Eh) range of 225–275 mV in the studied soil. Ferrihydrite in root iron plaque decreased As translocation from porewater to grain, but amendments were not able to increase plaque ferrihydrite content. Conclusion We conclude moderate husk amendment rates (i.e., 4 years’ worth) with minimal pretreatment strongly increases rice Si content but may not be sufficient to decrease grain As in low Si and As soil. 

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3. Spatial evidence of cryptic methane cycling and methylotrophic metabolisms along a land–ocean transect in salt marsh sediment

   https://doi.org/10.1016/j.gca.2025.07.019  

   Krause, Sebastian JE; Wipfler, Rebecca; Liu, Jiarui; Yousavich, David J; Robinson, DeMarcus; Hoyt, David W; Orphan, Victoria J; Treude, Tina (September 2025, Geochimica et Cosmochimica Acta)

   Methylotrophic methanogenesis in the sulfate-rich zone of coastal and marine sediments couples with anaerobic oxidation of methane (AOM), forming the cryptic methane cycle. This study provides evidence of cryptic methane cycling in the sulfate-rich zone across a land–ocean transect of four stations–two brackish, one marine, and one hypersaline–within the Carpinteria Salt Marsh Reserve (CSMR), southern California, USA. Samples from the top 20 cm of sediment from the transect were analyzed through geochemical and molecular (16S rRNA) techniques, in-vitro methanogenesis incubations, and radiotracer incubations utilizing 35S-SO4, 14C-mono-methylamine, and 14C-CH4. Sediment methane concentrations were consistently low (3 to 28 µM) at all stations, except for the marine station, where methane increased with depth reaching 665 µM. Methanogenesis from mono-methylamine was detected throughout the sediment at all stations with estimated CH4 production rates in the sub-nanomolar to nanomolar range per cm3 sediment and day. 16S rRNA analysis identified methanogenic archaea (Methanosarcinaceae, Methanomassiliicoccales, and Methanonatronarchaeacea) capable of producing methane from methylamines in sediment where methylotrophic methanogenesis was found to be active. Metabolomic analysis of porewater showed mono-methylamine was mostly undetectable (<3 µM) or present in trace amounts (<10 µM) suggesting rapid metabolic turnover. In-vitro methanogenesis incubations of natural sediment showed no linear methane buildup, suggesting a process limiting methane emissions. AOM activity, measured with 14C-CH4, overlapped with methanogenesis from mono-methylamine activity at all stations, with rates ranging from 0.03 to 19.4 nmol cm− 3 d− 1. Geochemical porewater analysis showed the CSMR sediments are rich in sulfate and iron. Porewater sulfate concentrations (9–91 mM) were non-limiting across the transect, supporting sulfate reduction activity (1.5–2,506 nmol cm− 3 d− 1). Porewater sulfide and iron (II) profiles indicated that the sediment transitioned from a predominantly iron-reducing environment at the two brackish stations to a predominantly sulfate-reducing environment at the marine and hypersaline stations, which coincided with the presence of phyla (Desulfobacterota) involved in these processes. AOM activity overlapped with sulfate reduction and porewater iron (II) concentrations suggesting that AOM is likely coupled to sulfate and possibly iron reduction at all stations. However, 16S rRNA analysis identified anaerobic methanotrophs (ANME-2) only at the marine and hypersaline stations while putative methanogens were found in sediment across all stations. In one sediment horizon at the marine station, methanogen families (Methanosarcinaceae, Methanosaetaceae, Methanomassiliicoccales, and Methanoregulaceae) and ANME 2a,2b, and 2c groups were found together. Collectively, our data suggest that at the brackish stations methanogens alone may be involved in cryptic methane cycling, while at the marine and hypersaline stations both groups may be involved in the process. Differences in rate constants from incubations with 14C-labeled methane and mono-methylamine suggest a non-methanogenic process oxidizing mono-methylamine to inorganic carbon, likely mediated by sulfate-reducing bacteria. Understanding the potential competition of sulfate reducers with methanogens for mono-methylamine needs further investigation as it might be another important process responsible for low methane emissions in salt marshes. 

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4. The Orchestration and Harmonics of Biogeochemical Cycles in a Southeastern USA Saltmarsh

   https://doi.org/10.1029/2025JG009005  

   Morris, James T; Sundberg, Karen (December 2025, Journal of Geophysical Research: Biogeosciences)

   Abstract Saltmarshes provide vital ecosystem services, including coastal protection and habitat for fisheries. While feedbacks influencing vertical sediment accretion in marshes are well‐documented, including those between relative sea level and primary production, relationships among nutrient cycles, flooding, and primary production remain less explored. This study presents a unique 30‐year data set from the North Inlet estuary, South Carolina, tracking monthly growth of the dominant macrophyte,Spartina alterniflora, and porewater concentrations of sulfide, ammonium, and phosphate. Our findings reveal correlated seasonal and decadal patterns of sulfides, nutrients, and plant growth, with periodicities linked to seasonal climate and decadal tidal cycles.S.alterniflorathrives in anaerobic sediments where sulfides are toxic byproducts of sulfate‐reducing bacteria (SRB) produced through the oxidation of organic acids. Dissolved organic compounds fluctuated seasonally in tandem with plant growth. Organic acids utilized by SRB are released as root exudates and produced via cellulosic biomass fermentation. SRB fix nitrogen and produce sulfides that solubilize phosphate, compensating for nutrients lost in drainage and rafting of aboveground biomass. By directly and indirectly producing the substrates,Spartinaeffectively regulates SRB activity, thereby orchestrating biogeochemical cycles and accumulating sulfides that inhibit competing species. Our results challenge the traditional view of sulfides as mere phytotoxins and saltmarshes as passive nutrient transformers. Instead, we propose a model whereinS.alterniflorasustains its growth and supports estuarine productivity by regulating its nitrogen and phosphorus supplies through a mutualistic relationship with SRB. 

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5. Data for: Drainage impacts on the productivity of wetland species Spartina alterniflora and Salicornia pacifica

   https://doi.org/10.5061/dryad.5qfttdzc1  

   Watson, Elizabeth; Chernesky, Kylie; Njie, Daouda; Champlin, Lena; Swenson Perger, Darci; University, Drexel (January 2023, Dryad)

   Coastal wetlands display ecohydrological zonation such that vertical differences of plant zones are driven by varying groundwater levels over tidal cycles. It is unclear how variable levels of tidal drainage directly impact biotic and abiotic factors in coastal wetland ecosystems. To determine the impacts of drainage levels, simulated tides in mesocosms with varying degrees of drainage were created with Spartina alterniflora, the salt marsh coastal ecosystem dominant species on the United States Atlantic Coast, and Salicornia pacifica, the Pacific Coast dominant. We measured biomass production and photosynthesis as indicators of plant health, and we also measured soil and porewater characteristics to help interpret patterns of productivity. These measures included above and belowground biomass, porewater pH, salinity, ammonium concentration, sulfide concentration, soil redox potential, net ecosystem exchange, photosynthesis rate, respiration rate, and methane flux. We found the greatest plant production in soils with intermediate drainage levels, with production values that were 13.7% higher for S. alterniflora and 57.7% higher for S. pacifica in the intermediate flooding levels than found in more inundated and more drained conditions. Understanding how drainage impacts plant species is important for predicting wetland resilience to sea level rise, as increasing water levels alter ecohydrological zonation. 

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