An official website of the United States government
Abstract To predict ecological responses at broad environmental scales, grass species are commonly grouped into two broad functional types based on photosynthetic pathway. However, closely related species may have distinctive anatomical and physiological attributes that influence ecological responses, beyond those related to photosynthetic pathway alone. Hyperspectral leaf reflectance can provide an integrated measure of covarying leaf traits that may result from phylogenetic trait conservatism and/or environmental conditions. Understanding whether spectra‐trait relationships are lineage specific or reflect environmental variation across sites is necessary for using hyperspectral reflectance to predict plant responses to environmental changes across spatial scales. We measured hyperspectral leaf reflectance (400–2400 nm) and 12 structural, biochemical, and physiological leaf traits from five grass‐dominated sites spanning the Great Plains of North America. We assessed if variation in leaf reflectance spectra among grass species is explained more by evolutionary lineage (as captured by tribes or subfamilies), photosynthetic pathway (C3or C4), or site differences. We then determined whether leaf spectra can be used to predict leaf traits within and across lineages. Our results using redundancy analysis ordination (RDA) show that grass tribe identity explained more variation in leaf spectra (adjustedR2 = 0.12) than photosynthetic pathway, which explained little variation in leaf spectra (adjustedR2 = 0.00). Furthermore, leaf reflectance from the same tribe across multiple sites was more similar than leaf reflectance from the same site across tribes (adjustedR2 = 0.12 and 0.08, respectively). Across all sites and species, trait predictions based on spectra ranged considerably in predictive accuracies (R2 = 0.65 to <0.01), butR2was >0.80 for certain lineages and sites. The relationship between Vcmax, a measure of photosynthetic capacity, and spectra was particularly promising. Chloridoideae, a lineage more common at drier sites, appears to have distinct spectra‐trait relationships compared with other lineages. Overall, our results show that evolutionary relatedness explains more variation in grass leaf spectra than photosynthetic pathway or site, but consideration of lineage‐ and site‐specific trait relationships is needed to interpret spectral variation across large environmental gradients.
more »
« less
Grass Evolutionary Lineages Can Be Identified Using Hyperspectral Leaf Reflectance
Abstract Hyperspectral remote sensing has the potential to map numerous attributes of the Earth’s surface, including spatial patterns of biological diversity. Grasslands are one of the largest biomes on Earth. Accurate mapping of grassland biodiversity relies on spectral discrimination of endmembers of species or plant functional types. We focused on spectral separation of grass lineages that dominate global grassy biomes: Andropogoneae (C4), Chloridoideae (C4), and Pooideae (C3). We examined leaf reflectance spectra (350–2,500 nm) from 43 grass species representing these grass lineages from four representative grassland sites in the Great Plains region of North America. We assessed the utility of leaf reflectance data for classification of grass species into three major lineages and by collection site. Classifications had very high accuracy (94%) that were robust to site differences in species and environment. We also show an information loss using multispectral sensors, that is, classification accuracy of grass lineages using spectral bands provided by current multispectral satellites is much lower (accuracy of 85.2% and 61.3% using Sentinel 2 and Landsat 8 bands, respectively). Our results suggest that hyperspectral data have an exciting potential for mapping grass functional types as informed by phylogeny. Leaf‐level hyperspectral separability of grass lineages is consistent with the potential increase in biodiversity and functional information content from the next generation of satellite‐based spectrometers.
more »
« less
- PAR ID:
- 10495842
- Publisher / Repository:
- American Geophysical Union
- Date Published:
- Journal Name:
- Journal of Geophysical Research: Biogeosciences
- Volume:
- 129
- Issue:
- 2
- ISSN:
- 2169-8953
- Format(s):
- Medium: X
- Sponsoring Org:
- National Science Foundation
More Like this
-
-
Uncrewed aerial systems (UASs) have emerged as powerful ecological observation platforms capable of filling critical spatial and spectral observation gaps in plant physiological and phenological traits that have been difficult to measure from space-borne sensors. Despite recent technological advances, the high cost of drone-borne sensors limits the widespread application of UAS technology across scientific disciplines. Here, we evaluate the tradeoffs between off-the-shelf and sophisticated drone-borne sensors for mapping plant species and plant functional types (PFTs) within a diverse grassland. Specifically, we compared species and PFT mapping accuracies derived from hyperspectral, multispectral, and RGB imagery fused with light detection and ranging (LiDAR) or structure-for-motion (SfM)-derived canopy height models (CHM). Sensor–data fusion were used to consider either a single observation period or near-monthly observation frequencies for integration of phenological information (i.e., phenometrics). Results indicate that overall classification accuracies for plant species and PFTs were highest in hyperspectral and LiDAR-CHM fusions (78 and 89%, respectively), followed by multispectral and phenometric–SfM–CHM fusions (52 and 60%, respectively) and RGB and SfM–CHM fusions (45 and 47%, respectively). Our findings demonstrate clear tradeoffs in mapping accuracies from economical versus exorbitant sensor networks but highlight that off-the-shelf multispectral sensors may achieve accuracies comparable to those of sophisticated UAS sensors by integrating phenometrics into machine learning image classifiers.more » « less
-
null (Ed.)Alaska has witnessed a significant increase in wildfire events in recent decades that have been linked to drier and warmer summers. Forest fuel maps play a vital role in wildfire management and risk assessment. Freely available multispectral datasets are widely used for land use and land cover mapping, but they have limited utility for fuel mapping due to their coarse spectral resolution. Hyperspectral datasets have a high spectral resolution, ideal for detailed fuel mapping, but they are limited and expensive to acquire. This study simulates hyperspectral data from Sentinel-2 multispectral data using the spectral response function of the Airborne Visible/Infrared Imaging Spectrometer-Next Generation (AVIRIS-NG) sensor, and normalized ground spectra of gravel, birch, and spruce. We used the Uniform Pattern Decomposition Method (UPDM) for spectral unmixing, which is a sensor-independent method, where each pixel is expressed as the linear sum of standard reference spectra. The simulated hyperspectral data have spectral characteristics of AVIRIS-NG and the reflectance properties of Sentinel-2 data. We validated the simulated spectra by visually and statistically comparing it with real AVIRIS-NG data. We observed a high correlation between the spectra of tree classes collected from AVIRIS-NG and simulated hyperspectral data. Upon performing species level classification, we achieved a classification accuracy of 89% for the simulated hyperspectral data, which is better than the accuracy of Sentinel-2 data (77.8%). We generated a fuel map from the simulated hyperspectral image using the Random Forest classifier. Our study demonstrated that low-cost and high-quality hyperspectral data can be generated from Sentinel-2 data using UPDM for improved land cover and vegetation mapping in the boreal forest.more » « less
-
Plant traits are often measured in the field or laboratory to characterize stress responses. However, direct measurements are not always cost effective for broader sampling efforts, whereas indirect approaches such as reflectance spectroscopy could offer efficient and scalable alternatives. Here, we used field spectroscopy to assess whether (1) existing vegetation indices could predict leaf trait responses to heat stress, or if (2) partial least squares regression (PLSR) spectral models could quantify these trait responses. On several warm, sunny days, we measured leaf trait responses indicative of photosynthetic mechanisms, plant water status, and morphology, including electron transport rate (ETR), photochemical quenching (qP), leaf water potential (Ψleaf), and specific leaf area (SLA) in 51 urban trees from nine species. Concurrent measures of hyperspectral leaf reflectance from the same individuals were used to calculate vegetation indices for correlation with trait responses. We found that vegetation indices predicted only SLA robustly (R2 = 0.55), while PLSR predicted all leaf trait responses of interest with modest success (R2 = 0.36 to 0.58). Using spectral band subsets corresponding to commercially available drone-mounted hyperspectral cameras, as well as those selected for use in common multispectral satellite missions, we were able to estimate ETR, qP, and SLA with reasonable accuracy, highlighting the potential for large-scale prediction of these parameters. Overall, reflectance spectroscopy and PLSR can identify wavelengths and wavelength ranges that are important for remote sensing-based modeling of important functional trait responses of trees to heat stress over broad ranges.more » « less
-
Biogeographic history can set initial conditions for vegetation community assemblages that determine their climate responses at broad extents that land surface models attempt to forecast. Numerous studies have indicated that evolutionarily conserved biochemical, structural, and other functional attributes of plant species are captured in visible-to-short wavelength infrared, 400 to 2,500 nm, reflectance properties of vegetation. Here, we present a remotely sensed phylogenetic clustering and an evolutionary framework to accommodate spectra, distributions, and traits. Spectral properties evolutionarily conserved in plants provide the opportunity to spatially aggregate species into lineages (interpreted as “lineage functional types” or LFT) with improved classification accuracy. In this study, we use Airborne Visible/Infrared Imaging Spectrometer data from the 2013 Hyperspectral Infrared Imager campaign over the southern Sierra Nevada, California flight box, to investigate the potential for incorporating evolutionary thinking into landcover classification. We link the airborne hyperspectral data with vegetation plot data from 1372 surveys and a phylogeny representing 1,572 species. Despite temporal and spatial differences in our training data, we classified plant lineages with moderate reliability (Kappa = 0.76) and overall classification accuracy of 80.9%. We present an assessment of classification error and detail study limitations to facilitate future LFT development. This work demonstrates that lineage-based methods may be a promising way to leverage the new-generation high-resolution and high return-interval hyperspectral data planned for the forthcoming satellite missions with sparsely sampled existing ground-based ecological data.more » « less
- Free Publicly Accessible Full Text
-
Accepted Manuscript1.0
- Journal Article:
- https://doi.org/10.1029/2023JG007852
