An official website of the United States government
Insects rely on their olfactory systems to detect odors and locate odor sources through highly efficient flapping-wing mechanisms. While previous studies on bio-inspired unsteady flows have primarily examined the aerodynamic functions of flapping wings, they have largely overlooked the effects of wing-induced unsteady flows on airborne odor stimuli. This study aims to explore how flapping kinematics influence odorant transport. Computational fluid dynamics simulations were employed to investigate unsteady flow fields and odorant transport by solving the Navier–Stokes and odor advection–diffusion equations. Both two-dimensional (2D) and three-dimensional (3D) simulations were conducted to visualize the flow fields and odor concentration distributions generated by pitching–plunging airfoils. Our findings reveal that higher Strouhal numbers, characterized by increased flapping frequency, produce stronger flow jets that enhance odor advection and dissipation downstream, while reducing odor concentration on the airfoil surface. In 2D simulations, symmetry breaking at high Strouhal numbers causes oblique advection of vortices and odor plumes. In contrast, 3D simulations exhibit bifurcated horseshoe-like vortex rings and corresponding odor plume bifurcations. These findings highlight the intricate coupling between unsteady aerodynamics and odor transport, offering valuable insights for bio-inspired designs and advanced olfactory navigation systems.
more »
« less
Spatial population genetics with fluid flow
Abstract The growth and evolution of microbial populations is often subjected to advection by fluid flows in spatially extended environments, with immediate consequences for questions of spatial population genetics in marine ecology, planktonic diversity and origin of life scenarios. Here, we review recent progress made in understanding this rich problem in the simplified setting of two competing genetic microbial strains subjected to fluid flows. As a pedagogical example we focus on antagonsim, i.e., two killer microorganism strains, each secreting toxins that impede the growth of their competitors (competitive exclusion), in the presence of stationary fluid flows. By solving two coupled reaction–diffusion equations that include advection by simple steady cellular flows composed of characteristic flow motifs in two dimensions (2D), we show how local flow shear and compressibility effects can interact with selective advantage to have a dramatic influence on genetic competition and fixation in spatially distributed populations. We analyze several 1D and 2D flow geometries including sources, sinks, vortices and saddles, and show how simple analytical models of the dynamics of the genetic interface can be used to shed light on the nucleation, coexistence and flow-driven instabilities of genetic drops. By exploiting an analogy with phase separation with nonconserved order parameters, we uncover how thesegeneticdrops harness fluid flows for novel evolutionary strategies, even in the presence of number fluctuations, as confirmed by agent-based simulations as well.
more »
« less
- Award ID(s):
- 2011754
- PAR ID:
- 10500402
- Publisher / Repository:
- IOPscience
- Date Published:
- Journal Name:
- Reports on Progress in Physics
- Volume:
- 85
- Issue:
- 9
- ISSN:
- 0034-4885
- Page Range / eLocation ID:
- 096601
- Format(s):
- Medium: X
- Sponsoring Org:
- National Science Foundation
More Like this
-
-
Antagonistic interactions are widespread in the microbial world and affect microbial evolutionary dynamics. Natural microbial communities often display spatial structure, which affects biological interactions, but much of what we know about microbial antagonism comes from laboratory studies of well-mixed communities. To overcome this limitation, we manipulated two killer strains of the budding yeastSaccharomyces cerevisiae, expressing different toxins, to independently control the rate at which they released their toxins. We developed mathematical models that predict the experimental dynamics of competition between toxin-producing strains in both well-mixed and spatially structured populations. In both situations, we experimentally verified theory’s prediction that a stronger antagonist can invade a weaker one only if the initial invading population exceeds a critical frequency or size. Finally, we found that toxin-resistant cells and weaker killers arose in spatially structured competitions between toxin-producing strains, suggesting that adaptive evolution can affect the outcome of microbial antagonism in spatial settings.more » « less
-
Transient growth and resolvent analyses are routinely used to assess nonasymptotic properties of fluid flows. In particular, resolvent analysis can be interpreted as a special case of viewing flow dynamics as an open system in which free-stream turbulence, surface roughness, and other irregularities provide sources of input forcing. We offer a comprehensive summary of the tools that can be employed to probe the dynamics of fluctuations around a laminar or turbulent base flow in the presence of such stochastic or deterministic input forcing and describe how input–output techniques enhance resolvent analysis. Specifically, physical insights that may remain hidden in the resolvent analysis are gained by detailed examination of input–output responses between spatially localized body forces and selected linear combinations of state variables. This differentiating feature plays a key role in quantifying the importance of different mechanisms for bypass transition in wall-bounded shear flows and in explaining how turbulent jets generate noise. We highlight the utility of a stochastic framework, with white or colored inputs, in addressing a variety of open challenges including transition in complex fluids, flow control, and physics-aware data-driven turbulence modeling. Applications with temporally or spatially periodic base flows are discussed and future research directions are outlined.more » « less
-
McMahon, Katherine (Ed.)ABSTRACT Most microbial life on Earth is found in localized microenvironments that collectively exert a crucial role in maintaining ecosystem health and influencing global biogeochemical cycles. In many habitats such as biofilms in aquatic systems, bacterial flocs in activated sludge, periphyton mats, or particles sinking in the ocean, these microenvironments experience sporadic or continuous flow. Depending on their microscale structure, pores and channels through the microenvironments permit localized flow that shifts the relative importance of diffusive and advective mass transport. How this flow alters nutrient supply, facilitates waste removal, drives the emergence of different microbial niches, and impacts the overall function of the microenvironments remains unclear. Here, we quantify how pores through microenvironments that permit flow can elevate nutrient supply to the resident bacterial community using a microfluidic experimental system and gain further insights from coupled population-based and computational fluid dynamics simulations. We find that the microscale structure determines the relative contribution of advection vs diffusion, and even a modest flow through a pore in the range of 10 µm s−1can increase the carrying capacity of a microenvironment by 10%. Recognizing the fundamental role that microbial hotspots play in the Earth system, developing frameworks that predict how their heterogeneous morphology and potential interstitial flows change microbial function and collectively alter global scale fluxes is critical.IMPORTANCEMicrobial life is a key driver of global biogeochemical cycles. Similar to the distribution of humans on Earth, they are often not homogeneously distributed in nature but occur in dense clusters that resemble microbial cities. Within and around these clusters, diffusion is often assumed as the sole mass-transfer process that dictates nutrient supply and waste removal. In many natural and engineered systems such as biofilms in aquatic environments, aggregates in bioremediation, or flocs in wastewater treatment plants, these clusters are exposed to flow that elevates mass transfer, a process that is often overlooked. In this study, we show that advective fluxes can increase the local growth of bacteria in a single microenvironment by up to 50% and shape their metabolism by disrupting localized anoxia or supplying nutrients at different rates. Collectively, advection-enhanced mass transport may thus regulate important biogeochemical transformations in both natural and engineered environments.more » « less
-
null (Ed.)Abstract “Synthetic recombinant” populations have emerged as a useful tool for dissecting the genetics of complex traits. They can be used to derive inbred lines for fine QTL mapping, or the populations themselves can be sampled for experimental evolution. In the latter application, investigators generally value maximizing genetic variation in constructed populations. This is because in evolution experiments initiated from such populations, adaptation is primarily fueled by standing genetic variation. Despite this reality, little has been done to systematically evaluate how different methods of constructing synthetic populations shape initial patterns of variation. Here we seek to address this issue by comparing outcomes in synthetic recombinant Saccharomyces cerevisiae populations created using one of two strategies: pairwise crossing of isogenic strains or simple mixing of strains in equal proportion. We also explore the impact of the varying the number of parental strains. We find that more genetic variation is initially present and maintained when population construction includes a round of pairwise crossing. As perhaps expected, we also observe that increasing the number of parental strains typically increases genetic diversity. In summary, we suggest that when constructing populations for use in evolution experiments, simply mixing founder strains in equal proportion may limit the adaptive potential.more » « less
- Free Publicly Accessible Full Text
-
Accepted Manuscript1.0
- Journal Article:
- https://doi.org/10.1088/1361-6633/ac8231
