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1. Development of the Honey Bee Gut Microbiome throughout the Queen-Rearing Process

   https://doi.org/10.1128/AEM.00307-15  

   Tarpy, David R.; Mattila, Heather R.; Newton, Irene L. (April 2015, Applied and Environmental Microbiology)

   Schloss, P. D. (Ed.)

   ABSTRACT The European honey bee ( Apis mellifera ) is used extensively to produce hive products and for crop pollination, but pervasive concerns about colony health and population decline have sparked an interest in the microbial communities that are associated with these important insects. Currently, only the microbiome of workers has been characterized, while little to nothing is known about the bacterial communities that are associated with queens, even though their health and proper function are central to colony productivity. Here, we provide a large-scale analysis of the gut microbiome of honey bee queens during their developmental trajectory and through the multiple colonies that host them as part of modern queen-rearing practices. We found that queen microbiomes underwent a dramatic shift in size and composition as they aged and encountered different worker populations and colony environments. Queen microbiomes were dominated by enteric bacteria in early life but were comprised primarily of alphaproteobacteria at maturity. Furthermore, queen gut microbiomes did not reflect those of the workers who tended them and, indeed, they lacked many of the bacteria that are considered vital to workers. While worker gut microbiotas were consistent across the unrelated colony populations sampled, the microbiotas of the related queens were highly variable. Bacterial communities in mature queen guts were similar in size to those of mature workers and were characterized by dominant and specific alphaproteobacterial strains known to be associated with worker hypopharyngeal glands. Our results suggest a model in which queen guts are colonized by bacteria from workers' glands, in contrast to routes of maternal inoculation for other animal microbiomes. 

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2. Social control of egg-laying in independently nest-founding bumble bee queens

   https://doi.org/10.1186/s12862-025-02364-0  

   Peto, Blanca_R; Costa, Claudinéia_P; Moore, Meghan_E; Woodard, S_Hollis (April 2025, BMC Ecology and Evolution)

   Abstract BackgroundEvolution has shaped diverse reproductive investment strategies, with some organisms integrating environmental cues into their reproductive decisions. In animal societies, social cues can further influence reproductive decisions in ways that might support the survival and success of the social group. Bumble bees are a lineage of eusocial insects wherein queens initiate nests independently. Bumble bee queens enter their eusocial phase only after successfully rearing their first offspring and thereafter exhibit an increased rate of egg-laying. We tested the idea that during bumble bee nest initiation, queen reproduction is socially context-dependent and under the control of social conditions in the nest. ResultsOur findings reveal that in the bumble beeBombus impatiens, queen egg-laying follows a dynamic, stereotypical pattern and is also heavily influenced by social group members. During the initial stages of nest initiation, accelerated egg-laying in queens is associated with the presence of workers or older larvae and pupae. Moreover, workers are required for queens to maintain increased levels of egg laying across the nest initiation stage. We also confirmed a previously-described pattern where queens temporarily decelerate egg-laying early in nest-founding, only to increase it again when the first adult workers are soon to emerge. This “pause” in egg-laying was observed in allB. impatiensqueens as well as in additional species examined. ConclusionsOur results support the idea that eusocial systems can employ socially context-dependent control of queen egg-laying as a reproductive strategy. In some solitary-founding lineages, including bumble bees, queens may reach their full reproductive potential only after the emergence of the first adult workers, who then take over brood care. This stands in contrast to the hyper-reproductivity observed in some eusocial species. The presence of workers and older brood (who will soon eclose) not only alleviates queen brood care responsibilities but may also provide signals that cause queens to increase their reproductive output. These phenomena may allow queens to adapt their reproductive output to the conditions of the colony. Broadly, these findings highlight the dynamic interplay between social conditions and reproduction in bumble bees. 

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3. Evolutionary trends in Bombella apis CRISPR-Cas systems

   https://doi.org/10.1128/msystems.00166-25  

   Ganote, Carrie L; Caesar, Lílian; Rice, Danny W; Whitaker, Rachel J; Newton, Irene_L G (July 2025, mSystems)

   Gilbert, Jack A (Ed.)

   ABSTRACT Bacteria and archaea employ a rudimentary immune system, CRISPR-Cas, to protect against foreign genetic elements such as bacteriophage. CRISPR-Cas systems are found inBombella apis.B. apisis an important honey bee symbiont, found primarily in larvae, queens, and hive compartments.B. apisis found in the worker bee gut but is not considered a core member of the bee microbiome and has therefore been understudied with regard to its importance in the honey bee colony. However,B. apisappears to play beneficial roles in the colony, by protecting developing brood from fungal pathogens and by bolstering their development under nutritional stress. Previously, we identified CRISPR-Cas systems as being acquired byB. apisin its transition to bee association, as they are absent in a sister clade. Here, we assess the variation and distribution of CRISPR-Cas types acrossB. apisstrains. We found multiple CRISPR-Cas types, some of which have multiple arrays, within the sameB. apisgenomes and also in the honey bee queen gut metagenomes. We analyzed the spacers between strains to identify the history of mobile element interaction for eachB. apisstrain. Finally, we predict interactions between viral sequences and CRISPR systems from different honey bee microbiome members. Our analyses show that theB. apisCRISPR-Cas systems are dynamic; that microbes in the same niche have unique spacers, which supports the functionality of these CRISPR-Cas systems; and that acquisition of new spacers may be occurring in multiple locations in the genome, allowing for a flexible antiviral arsenal for the microbe. IMPORTANCEHoney bee worker gut microbes have been implicated in everything from protection from pathogens to breakdown of complex polysaccharides in the diet. However, there are multiple niches within a honey bee colony that host different groups of microbes, including the acetic acid bacteriumBombella apis.B. apisis found in the colony food stores, in association with brood, in worker hypopharyngeal glands, and in the queen’s digestive tract. The roles thatB. apismay serve in these environments are just beginning to be discovered and include the production of a potent antifungal that protects developing bees and supplementation of dietary lysine to young larvae, bolstering their nutrition. Niche specificity inB. apismay be affected by the pressures of bacteriophage and other mobile elements, which may target different strains in each specific bee environment. Studying the interplay betweenB. apisand its mobile genetic elements (MGEs) may help us better understand microbial community dynamics within the colony and the potential ramifications for the honey bee host. 

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4. An organizing feature of bumble bee life history: worker emergence promotes queen reproduction and survival in young nests.

   https://doi.org/https://doi.org/10.1093/conphys/coab047  

   Sarro E, Sun P (January 2021, Conservation physiology)

   null (Ed.)

   Bumble bee queens initiate nests solitarily and transition to living socially once they successfully rear their first cohort of offspring. Bumble bees are disproportionately important for early season pollination, and many populations are experiencing dramatic declines. In this system, the onset of the social stage is critical for nest survival, yet the mechanisms that facilitate this transition remain understudied. Further, the majority of conservation efforts target the social stage of the bumble bee life cycle and do not address the solitary founding stage. We experimentally manipulated the timing of worker emergence in young nests of bumble bee (Bombus impatiens) queens to determine whether and how queen fecundity and survival are impacted by the emergence of workers in the nest. We found that queens with workers added to the nest exhibit increased ovary activation, accelerated egg laying, elevated juvenile hormone (JH) titres and also lower mortality relative to solitary queens. We also show that JH is more strongly impacted by the social environment than associated with queen reproductive state, suggesting that this key regulator of insect reproduction has expanded its function in bumble bees to also influence social organization. We further demonstrate that these effects are independent of queen social history, suggesting that this underlying mechanism promoting queen fecundity is reversible and short lived. Synchronization between queen reproductive status and emergence of workers in the nest may ultimately increase the likelihood of early nesting success in social systems with solitary nest founding. Given that bumble bee workers regulate queen physiology as we have demonstrated, the timing of early worker emergence in the nest likely impacts queen fitness, colony developmental trajectories and ultimately nesting success. Collectively, our findings underline the importance of conservation interventions for bumble bees that support the early nesting period and facilitate the production and maintenance of workers in young nests 

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5. Adult honey bee queens consume pollen and nectar

   https://doi.org/10.1101/2024.12.04.626851  

   St_Clair, Ashley L; Dwyer, Bridget; Shapiro, Madeleine; Dolezal, Adam G (December 2024, bioRxiv)

   Abstract Despite the queen’s crucial reproductive role in honey bee colonies, queen diet and feeding behavior remain remarkably enigmatic, with most studies assuming they are solely fed nutritious glandular secretions (i.e., royal jelly) by workers. This colors our understanding of basic honey bee biology and how governmental agencies assess pesticide risk. We hypothesized that adult queens also consume honey and pollen. Through experiments with queenright laboratory microcolonies fed with marked diets, we demonstrate that queens are fed pollen and nectar by workers and can also feed directly. We then measured pollen content in mature, unmanipulated queens sacrificed from 43 conventional field colonies from two distinct geographical regions. Similar to workers, we found pollen in almost all queens guts, though at expectedly lower quantities than in young workers. These findings suggest queens have a more complex, dynamic diet than previously thought, raising new questions about how dietary habits and feeding behaviors influence pesticide risk and other aspects of queen biology. 

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