An official website of the United States government
Abstract Sex chromosomes play an outsized role in adaptation and speciation, and thus deserve particular attention in evolutionary genomics. In particular, fusions between sex chromosomes and autosomes can produce neo‐sex chromosomes, which offer important insights into the evolutionary dynamics of sex chromosomes. Here, we investigate the evolutionary origin of the previously reportedDanausneo‐sex chromosome within the tribe Danaini. We assembled and annotated genomes ofTirumala septentrionis(subtribe Danaina),Ideopsis similis(Amaurina),Idea leuconoe(Euploeina) andLycorea halia(Itunina) and identified their Z‐linked scaffolds. We found that theDanausneo‐sex chromosome resulting from the fusion between a Z chromosome and an autosome corresponding to theMelitaea cinxiachromosome (McChr) 21 arose in a common ancestor of Danaina, Amaurina and Euploina. We also identified two additional fusions as the W chromosome further fused with the synteny block McChr31 inI. similisand independent fusion occurred between ancestral Z chromosome and McChr12 inL. halia. We further tested a possible role of sexually antagonistic selection in sex chromosome turnover by analysing the genomic distribution of sex‐biased genes inI. leuconoeandL. halia. The autosomes corresponding to McChr21 and McChr31 involved in the fusions are significantly enriched in female‐ and male‐biased genes, respectively, which could have hypothetically facilitated fixation of the neo‐sex chromosomes. This suggests a role of sexual antagonism in sex chromosome turnover in Lepidoptera. The neo‐Z chromosomes of bothI. leuconoeandL. haliaappear fully compensated in somatic tissues, but the extent of dosage compensation for the ancestral Z varies across tissues and species.
more »
« less
Exploring chromosome evolution in 250 million year old groups of dragonflies and damselflies (Insecta:Odonata)
Abstract Using recently published chromosome‐length genome assemblies of two damselfly species,Ischnura elegansandPlatycnemis pennipes, and two dragonfly species,Pantala flavescensandTanypteryx hageni, we demonstrate that the autosomes of Odonata have undergone few fission, fusion, or inversion events, despite 250 million years of separation. In the four genomes discussed here, our results show that all autosomes have a clear ortholog in the ancestral karyotype. Despite this clear chromosomal orthology, we demonstrate that different factors, including concentration of repeat dynamics, GC content, relative position on the chromosome, and the relative proportion of coding sequence all influence the density of syntenic blocks across chromosomes. However, these factors do not interact to influence synteny the same way in any two pairs of species, nor is any one factor retained in all four species. Furthermore, it was previously unknown whether the micro‐chromosomes in Odonata are descended from one ancestral chromosome. Despite structural rearrangements, our evidence suggests that the micro‐chromosomes in the sampled Odonata do indeed descend from an ancestral chromosome, and that the micro‐chromosome inP. flavescenswas lost through fusion with autosomes.
more »
« less
- PAR ID:
- 10510199
- Publisher / Repository:
- Wiley
- Date Published:
- Journal Name:
- Molecular Ecology
- Volume:
- 32
- Issue:
- 21
- ISSN:
- 0962-1083
- Page Range / eLocation ID:
- 5785 to 5797
- Format(s):
- Medium: X
- Sponsoring Org:
- National Science Foundation
More Like this
-
-
Summary Karyotypes provide key cytogenetic information on the phylogenetic relationships and evolutionary origins in related eukaryotic species. Despite our knowledge of the chromosome numbers of sugarcane and its wild relatives, the chromosome composition and evolution among the species in theSaccharumcomplex have been elusive owing to the complex polyploidy and the large numbers of chromosomes of these species.Oligonucleotide‐based chromosome painting has become a powerful tool of cytogenetic studies especially for plant species with large numbers of chromosomes. We developed oligo‐based chromosome painting probes for all 10 chromosomes inSaccharum officinarum(2n = 8x = 80). The 10 painting probes generated robust fluorescencein situhybridization signals in all plant species within theSaccharumcomplex, including species in the generaSaccharum,Miscanthus,NarengaandErianthus.We conducted comparative chromosome analysis using the same set of probes among species from four different genera within theSaccharumcomplex. Excitingly, we discovered several novel cytotypes and chromosome rearrangements in these species.We discovered that fusion from two different chromosomes is a common type of chromosome rearrangement associated with the species in theSaccharumcomplex. Such fusion events changed the basic chromosome number and resulted in distinct allopolyploids in theSaccharumcomplex.more » « less
-
Fishman, Lila (Ed.)Abstract The XX/XY sex chromosome system is deeply conserved in therian mammals, as is the role of Sry in testis determination, giving the impression of stasis relative to other taxa. However, the long tradition of cytogenetic studies in mammals documents sex chromosome karyotypes that break this norm in myriad ways, ranging from fusions between sex chromosomes and autosomes to Y chromosome loss. Evolutionary conflict, in the form of sexual antagonism or meiotic drive, is the primary predicted driver of sex chromosome transformation and turnover. Yet conflict-based hypotheses are less considered in mammals, perhaps because of the perceived stability of the sex chromosome system. To address this gap, we catalog and characterize all described sex chromosome variants in mammals, test for family-specific rates of accumulation, and consider the role of conflict between the sexes or within the genome in the evolution of these systems. We identify 152 species with sex chromosomes that differ from the ancestral state and find evidence for different rates of ancestral to derived transitions among families. Sex chromosome-autosome fusions account for 79% of all variants whereas documented sex chromosome fissions are limited to three species. We propose that meiotic drive and drive suppression provide viable explanations for the evolution of many of these variant systems, particularly those involving autosomal fusions. We highlight taxa particularly worthy of further study and provide experimental predictions for testing the role of conflict and its alternatives in generating observed sex chromosome diversity.more » « less
-
null (Ed.)The rate of divergence for Z or X chromosomes is usually observed to be greater than autosomes, but the proposed evolutionary causes for this pattern vary, as do empirical results from diverse taxa. Even among moths and butterflies (Lepidoptera), which generally share a single-origin Z chromosome, the handful of available studies give mixed support for faster or more adaptive evolution of the Z chromosome, depending on the species assayed. Here, we examine the molecular evolution of Z chromosomes in two additional lepidopteran species: the Carolina sphinx moth and the monarch butterfly, the latter of which possesses a recent chromosomal fusion yielding a segment of newly Z-linked DNA. We find evidence for both faster and more adaptive Z chromosome evolution in both species, though this effect is strongest in the neo-Z portion of the monarch sex chromosome. The neo-Z is less male-biased than expected of a Z chromosome, and unbiased and female-biased genes drive the signal for adaptive evolution here. Together these results suggest that male-biased gene accumulation and haploid selection have opposing effects on long-term rates of adaptation and may help explain the discrepancies in previous findings as well as the repeated evolution of neo-sex chromosomes in Lepidoptera.more » « less
-
Larracuente, Amanda (Ed.)Abstract Chromosome size and morphology vary within and among species, but little is known about the proximate or ultimate causes of these differences. Cichlid fish species in the tribe Oreochromini share an unusual giant chromosome that is ∼3 times longer than the other chromosomes. This giant chromosome functions as a sex chromosome in some of these species. We test two hypotheses of how this giant sex chromosome may have evolved. The first hypothesis proposes that it evolved by accumulating repetitive elements as recombination was reduced around a dominant sex determination locus, as suggested by canonical models of sex chromosome evolution. An alternative hypothesis is that the giant sex chromosome originated via the fusion of an autosome with a highly repetitive B chromosome, one of which carried a sex determination locus. We test these hypotheses using comparative analysis of chromosome-scale cichlid and teleost genomes. We find that the giant sex chromosome consists of three distinct regions based on patterns of recombination, gene and transposable element content, and synteny to the ancestral autosome. The WZ sex determination locus encompasses the last ∼105 Mb of the 134-Mb giant chromosome. The last 47 Mb of the giant chromosome shares no obvious homology to any ancestral chromosome. Comparisons across 69 teleost genomes reveal that the giant sex chromosome contains unparalleled amounts of endogenous retroviral elements, immunoglobulin genes, and long noncoding RNAs. The results favor the B chromosome fusion hypothesis for the origin of the giant chromosome.more » « less
- Free Publicly Accessible Full Text
-
Accepted Manuscript1.0
- Journal Article:
- https://doi.org/10.1111/mec.17147
