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Dilated cardiomyopathy (DCM) is the third most common cause of heart failure and the primary reason for heart transplantation; upward of 70% of DCM cases are considered idiopathic. Our in-vitro experiments showed that reduced hybrid/complex N-glycosylation in mouse cardiomyocytes is linked with DCM. Further, we observed direct effects of reduced N-glycosylation on K v gating. However, it is difficult to rigorously determine the effects of glycosylation on K v activity, because there are multiple K v isoforms in cardiomyocytes contributing to the cardiac excitation. Due to complex functions of K v isoforms, only the sum of K + currents (I Ksum ) can be recorded experimentally and decomposed later using exponential fitting to estimate component currents, such as I Kto , I Kslow , and I Kss . However, such estimation cannot adequately describe glycosylation effects and K v mechanisms. Here, we propose a framework of simulation modeling of K v kinetics in mouse ventricular myocytes and model calibration using the in-vitro data under normal and reduced glycosylation conditions through ablation of the Mgat1 gene (i.e., Mgat1KO). Calibrated models facilitate the prediction of K v characteristics at different voltages that are not directly observed in the in-vitro experiments. A model calibration procedure is developed based on the genetic algorithm. Experimental results show that, in the Mgat1KO group, both I Kto and I Kslow densities are shown to be significantly reduced and the rate of I Kslow inactivation is much slower. The proposed approach has strong potential to couple simulation models with experimental data for gaining a better understanding of glycosylation effects on K v kinetics.
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Model-guided concurrent data assimilation for calibrating cardiac ion-channel kinetics
Potassium channels (Kv) are responsible for repolarizing the action potential in cardiomyocytes. There is a variety of Kv isoforms and corresponding currents (e.g. IKto, IKslow1, IKslow2) that contribute to different phases of repolarization. Because only the sum of their activities can be measured in the form of currents (IKsum), there is a need to delineate individual K+ currents. Most existing studies make inference of Kv activities via curve-fitting procedures but encounter certain limitations as follows: (1) curve-fitting decomposition only relies on the shape of K+ current traces, which does not discern the underlying kinetics; (2) IKsum traces can only be fitted for one clamp voltage at each time, and then analyzed in a population-averaged way later. This paper presents a novel concurrent data assimilation method to calibrate biophysics-based models and delineate kinetics of Kv isoforms with multiple voltage-clamp responses simultaneously. The proposed method is evaluated and validated with whole-cell IKsum recordings from wild-type and chronically glycosylation-deficient cardiomyocytes. Experimental results show that the proposed method effectively handles multiple-response data and describes glycosylation-conferred perturbations to Kv isoforms. Further, we develop a graphical-user-interface (GUI) application that provides an enabling tool to biomedical scientists for data-driven modeling and analysis of Kv kinetics in various heart diseases.
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- PAR ID:
- 10511972
- Publisher / Repository:
- Taylor & Francis
- Date Published:
- Journal Name:
- IISE Transactions on Healthcare Systems Engineering
- Volume:
- 14
- Issue:
- 2
- ISSN:
- 2472-5579
- Page Range / eLocation ID:
- 153-166
- Subject(s) / Keyword(s):
- Data assimilation simulation modeling model calibration cardiac potassium channels congenital disorders of glycosylation in-silico modeling cardiac modeling ion channels
- Format(s):
- Medium: X
- Sponsoring Org:
- National Science Foundation
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- Free Publicly Accessible Full Text
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Accepted Manuscript1.0
- Journal Article:
- https://doi.org/10.1080/24725579.2023.2239271
