skip to main content
US FlagAn official website of the United States government
dot gov icon
Official websites use .gov
A .gov website belongs to an official government organization in the United States.
https lock icon
Secure .gov websites use HTTPS
A lock ( lock ) or https:// means you've safely connected to the .gov website. Share sensitive information only on official, secure websites.

Attention:

The NSF Public Access Repository (PAR) system and access will be unavailable from 10:00 PM ET on Friday, February 6 until 10:00 AM ET on Saturday, February 7 due to maintenance. We apologize for the inconvenience.


Title: Topology in soft and biological matter
The last years have witnessed remarkable advances in our understanding of the emergence and consequences of topological constraints in biological and soft matter. Examples are abundant in relation to (bio)polymeric systems and range from the characterization of knots in single polymers and proteins to that of whole chromosomes and polymer melts. At the same time, considerable advances have been made in the description of the interplay between topological and physical properties in complex fluids, with the development of techniques that now allow researchers to control the formation of and interaction between defects in diverse classes of liquid crystals. Thanks to technological progress and the integration of experiments with increasingly sophisticated numerical simulations, topological biological and soft matter is a vibrant area of research attracting scientists from a broad range of disciplines. However, owing to the high degree of specialization of modern science, many results have remained confined to their own particular fields, with different jargon making it difficult for researchers to share ideas and work together towards a comprehensive view of the diverse phenomena at play. Compelled by these motivations, here we present a comprehensive overview of topological effects in systems ranging from DNA and genome organization to entangled proteins, polymeric materials, liquid crystals, and theoretical physics, with the intention of reducing the barriers between different fields of soft matter and biophysics. Particular care has been taken in providing a coherent formal introduction to the topological properties of polymers and of continuum materials and in highlighting the underlying common aspects concerning the emergence, characterization, and effects of topological objects in different systems. The second half of the review is dedicated to the presentation of the latest results in selected problems, specifically, the effects of topological constraints on the viscoelastic properties of polymeric materials; their relation with genome organization; a discussion on the emergence and possible effects of knots and other entanglements in proteins; the emergence and effects of topological defects and solitons in complex fluids. This review is dedicated to the memory of Marek Cieplak.  more » « less
Award ID(s):
2019745
PAR ID:
10513438
Author(s) / Creator(s):
; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; more » ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; « less
Publisher / Repository:
Elsevier B.V.
Date Published:
Journal Name:
Physics Reports
Volume:
1075
Issue:
C
ISSN:
0370-1573
Page Range / eLocation ID:
1 to 137
Format(s):
Medium: X
Sponsoring Org:
National Science Foundation
More Like this
  1. Liquid crystals are complex fluids that allow exquisite control of light propagation thanks to their orientational order and optical anisotropy. Inspired by recent advances in liquid-crystal photo-patterning technology, we propose a soft-matter platform for assembling topological photonic materials that holds promise for protected unidirectional waveguides, sensors, and lasers. Crucial to our approach is to use spatial variations in the orientation of the nematic liquid-crystal molecules to emulate the time modulations needed in a so-called Floquet topological insulator. The varying orientation of the nematic director introduces a geometric phase that rotates the local optical axes. In conjunction with suitably designed structural properties, this geometric phase leads to the creation of topologically protected states of light. We propose and analyze in detail soft photonic realizations of two iconic topological systems: a Su–Schrieffer–Heeger chain and a Chern insulator. The use of soft building blocks potentially allows for reconfigurable systems that exploit the interplay between topological states of light and the underlying responsive medium. 
    more » « less
  2. Topological defects play a central role in the physics of many materials, including magnets, superconductors, and liquid crystals. In active fluids, defects become autonomous particles that spontaneously propel from internal active stresses and drive chaotic flows stirring the fluid. The intimate connection between defect textures and active flow suggests that properties of active materials can be engineered by controlling defects, but design principles for their spatiotemporal control remain elusive. Here, we propose a symmetry-based additive strategy for using elementary activity patterns, as active topological tweezers, to create, move, and braid such defects. By combining theory and simulations, we demonstrate how, at the collective level, spatial activity gradients act like electric fields which, when strong enough, induce an inverted topological polarization of defects, akin to a negative susceptibility dielectric. We harness this feature in a dynamic setting to collectively pattern and transport interacting active defects. Our work establishes an additive framework to sculpt flows and manipulate active defects in both space and time, paving the way to design programmable active and living materials for transport, memory, and logic. 
    more » « less
  3. Liquid crystals (LCs) are fluids within which molecules exhibit long-range orientational order, leading to anisotropic properties such as optical birefringence and curvature elasticity. Because the ordering of molecules within LCs can be altered by weak external stimuli, LCs have been widely used to create soft matter systems that respond optically to electric fields (LC display), temperature (LC thermometer) or molecular adsorbates (LC chemical sensor). More recent studies, however, have moved beyond investigations of optical responses of LCs to explore the design of complex LC-based soft matter systems that offer the potential to realize more sophisticated functions ( e.g. , autonomous, self-regulating chemical responses to mechanical stimuli) by directing the interactions of small molecules, synthetic colloids and living cells dispersed within the bulk of LCs or at their interfaces. These studies are also increasingly focusing on LC systems driven beyond equilibrium states. This review presents one perspective on these advances, with an emphasis on the discovery of fundamental phenomena that may enable new technologies. Three areas of progress are highlighted; (i) directed assembly of amphiphilic molecules either within topological defects of LCs or at aqueous interfaces of LCs, (ii) templated polymerization in LCs via chemical vapor deposition, an approach that overcomes fundamental challenges related to control of LC phase behavior during polymerization, and (iii) studies of colloids in LCs, including chiral colloids, soft colloids that are strained by LCs, and active colloids that are driven into organized states by dissipation of energy ( e.g. bacteria). These examples, and key unresolved issues discussed at the end of this perspective, serve to convey the message that soft matter systems that integrate ideas from LC, surfactant, polymer and colloid sciences define fertile territory for fundamental studies and creation of future transformative technologies. 
    more » « less
  4. null (Ed.)
    Microorganisms may exhibit rich swimming behaviours in anisotropic fluids, such as liquid crystals, which have direction-dependent physical and rheological properties. Here we construct a two-dimensional computation model to study the undulatory swimming mechanisms of microswimmers in a solution of rigid, rodlike liquid crystal polymers. We describe the fluid phase using Doi's $$Q$$ -tensor model, and treat the swimmer as a finite-length flexible fibre with imposed propagating travelling waves on the body curvature. The fluid–structure interactions are resolved via an immersed boundary method. Compared with the swimming dynamics in Newtonian fluids, we observe non-Newtonian behaviours that feature both enhanced and retarded swimming motions in lyotropic liquid crystal polymers. We reveal the propulsion mechanism by analysing the near-body flow fields and polymeric force distributions, together with asymptotic analysis for an idealized model of Taylor's swimming sheet. 
    more » « less
  5. Liquid crystalline elastomers (LCEs) are polymer networks exhibiting anisotropic liquid crystallinity while maintaining elastomeric properties. Owing to diverse polymeric forms and self-alignment molecular behaviors, LCEs have fascinated state-of-the-art efforts in various disciplines other than the traditional low-molar-mass display market. By patterning order to structures, LCEs demonstrate reversible high-speed and large-scale actuations in response to external stimuli, allowing for close integration with 4D printing and architectures of digital devices, which is scarcely observed in homogeneous soft polymer networks. In this review, we collect recent advances in 4D printing of LCEs, with emphases on synthesis and processing methods that enable microscopic changes in the molecular orientation and hence macroscopic changes in the properties of end-use objects. Promising potentials of printed complexes include fields of soft robotics, optics, and biomedical devices. Within this scope, we elucidate the relationships among external stimuli, tailorable morphologies in mesophases of liquid crystals, and programmable topological configurations of printed parts. Lastly, perspectives and potential challenges facing 4D printing of LCEs are discussed. 
    more » « less