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1. Extraction and Characterization of Lipids from Macroalgae

   https://doi.org/10.1007/978-1-4939-9484-7_7  

   Nobles DR Jr, Manning SR (January 2019, Methods in molecular biology)

   Although most algal biofuel research has focused on microalgae, macroalgae are also potential sources of lipid for the production of biodiesel and other liquid fuels. Reliable, accurate methods for assessing the lipid composition of biomass are essential for the development of macroalgae in this area. The conventional methods most commonly used to evaluate lipid composition, such as those of Bligh and Dyer and Folch, do not provide complete extraction of lipids in photosynthetic cells/tissues and therefore do not provide an accurate accounting of lipid production. Here we present a 2-EE lipid extraction protocol, a method which has been demonstrated to be superior to conventional lipid extraction methods for microalgae, adapted for use with macroalgae. 

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2. Attached Algae: The Cryptic Base of Inverted Trophic Pyramids in Freshwaters

   https://doi.org/10.1146/annurev-ecolsys-121415-032340  

   Vadeboncoeur, Yvonne; Power, Mary E. (November 2017, Annual Review of Ecology, Evolution, and Systematics)

   It seems improbable that a thin veneer of attached algae coating submerged surfaces in lakes and rivers could be the foundation of many freshwater food webs, but increasing evidence from chemical tracers supports this view. Attached algae grow on any submerged surface that receives enough light for photosynthesis, but animals often graze attached algae down to thin, barely perceptible biofilms. Algae in general are more nutritious and digestible than terrestrial plants or detritus, and attached algae are particularly harvestable, being concentrated on surfaces. Diatoms, a major component of attached algal assemblages, are especially nutritious and tolerant of heavy grazing. Algivores can track attached algal productivity over a range of spatial scales and consume a high proportion of new attached algal growth in high-light, low-nutrient ecosystems. The subsequent efficient conversion of the algae into consumer production in freshwater food webs can lead to low-producer, high-consumer biomass, patterns that Elton (1927) described as inverted trophic pyramids. Human perturbations of nutrient, sediment, and carbon loading into freshwaters and of thermal and hydrologic regimes can weaken consumer control of algae and promote nuisance attached algal blooms. 

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3. Cascade/Parallel Biocatalysis via Multi-enzyme Encapsulation on Metal–Organic Materials for Rapid and Sustainable Biomass Degradation

   https://doi.org/https://doi.org/10.1021/acsami.1c12209  

   Li, Q.; Pan, Y.; Li, H.; Lenertz, M.; Reed, K.; Jordahl, D.; Bjerke, T.; Ugrinov, A.; Chen, B.; Yang, Z. (September 2021, ACS applied materials interfaces)

   null (Ed.)

   Multiple-enzyme cooperation simultaneously is an effective approach to biomass conversion and biodegradation. The challenge, however, lies in the interference of the involved enzymes with each other, especially when a protease is needed, and thus, the difficulty in reusing the enzymes; while extracting/synthesizing new enzymes costs energy and negative impact on the environment. Here, we present a unique approach to immobilize multiple enzymes, including a protease, on a metal–organic material (MOM) via co-precipitation in order to enhance the reusability and sustainability. We prove our strategy on the degradation of starch-containing polysaccharides (require two enzymes to degrade) and food proteins (require a protease to digest) before the quantification of total dietary fiber. As compared to the widely adopted “official” method, which requires the sequential addition of three enzymes under different conditions (pH/temperature), the three enzymes can be simultaneously immobilized on the surface of our MOM crystals to allow for contact with the large substrates (starch), while MOMs offer sufficient protection to the enzymes so that the reusability and long-term storage are improved. Furthermore, the same biodegradation can be carried out without adjusting the reaction condition, further reducing the reaction time. Remarkably, the simultaneous presence of all enzymes enhances the reaction efficiency by a factor of ∼3 as compared to the official method. To our best knowledge, this is the first experimental demonstration of using aqueous-phase co-precipitation to immobilize multiple enzymes for large-substrate biocatalysis. The significantly enhanced efficiency can potentially impact the food industry by reducing the labor requirement and enhancing enzyme cost efficiency, leading to reduced food cost. The reduced energy cost of extracting enzymes and adjusting reaction conditions minimize the negative impact on the environment. The strategy to prevent protease damage in a multi-enzyme system can be adapted to other biocatalytic reactions involving proteases. 

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4. Abrupt changes in algal biomass of thousands of US lakes are related to climate and are more likely in low-disturbance watersheds

   https://doi.org/10.1073/pnas.2416172122  

   Soranno, Patricia A; Hanly, Patrick J; Webster, Katherine E; Wagner, Tyler; McDonald, Andrew; Shuvo, Arnab; Schliep, Erin M; Reinl, Kaitlin L; McCullough, Ian M; Tan, Pang-Ning; et al (March 2025, Proceedings of the National Academy of Sciences)

   Climate change is predicted to intensify lake algal blooms globally and result in regime shifts. However, observed increases in algal biomass do not consistently correlate with air temperature or precipitation, and evidence is lacking for a causal effect of climate or the nonlinear dynamics needed to demonstrate regime shifts. We modeled the causal effects of climate on annual lake chlorophyll (a measure of algal biomass) over 34 y for 24,452 lakes across broad ecoclimatic zones of the United States and evaluated the potential for regime shifts. We found that algal biomass was causally related to climate in 34% of lakes. In these cases, 71% exhibited abrupt but mostly temporary shifts as opposed to persistent changes, 13% had the potential for regime shifts. Climate was causally related to algal biomass in lakes experiencing all levels of human disturbance, but with different likelihood. Climate causality was most likely to be observed in lakes with minimal human disturbance and cooler summer temperatures that have increased over the 34 y studied. Climate causality was variable in lakes with low to moderate human disturbance, and least likely in lakes with high human disturbance, which may mask climate causality. Our results explain some of the previously observed heterogeneous climate responses of lake algal biomass globally and they can be used to predict future climate effects on lakes. 

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5. Complex organic matter degradation by secondary consumers in chemolithoautotrophy-based subsurface geothermal ecosystems

   https://doi.org/10.1371/journal.pone.0281277  

   Paul, Raegan; Rogers, Timothy J.; Fullerton, Kate M.; Selci, Matteo; Cascone, Martina; Stokes, Murray H.; Steen, Andrew D.; de Moor, J. Maarten; Chiodi, Agostina; Stefánsson, Andri; et al (August 2023, PLOS ONE)

   Yin, Yanbin (Ed.)

   Microbial communities in terrestrial geothermal systems often contain chemolithoautotrophs with well-characterized distributions and metabolic capabilities. However, the extent to which organic matter produced by these chemolithoautotrophs supports heterotrophs remains largely unknown. Here we compared the abundance and activity of peptidases and carbohydrate active enzymes (CAZymes) that are predicted to be extracellular identified in metagenomic assemblies from 63 springs in the Central American and the Andean convergent margin (Argentinian backarc of the Central Volcanic Zone), as well as the plume-influenced spreading center in Iceland. All assemblies contain two orders of magnitude more peptidases than CAZymes, suggesting that the microorganisms more often use proteins for their carbon and/or nitrogen acquisition instead of complex sugars. The CAZy families in highest abundance are GH23 and CBM50, and the most abundant peptidase families are M23 and C26, all four of which degrade peptidoglycan found in bacterial cells. This implies that the heterotrophic community relies on autochthonous dead cell biomass, rather than allochthonous plant matter, for organic material. Enzymes involved in the degradation of cyanobacterial- and algal-derived compounds are in lower abundance at every site, with volcanic sites having more enzymes degrading cyanobacterial compounds and non-volcanic sites having more enzymes degrading algal compounds. Activity assays showed that many of these enzyme classes are active in these samples. High temperature sites (> 80°C) had similar extracellular carbon-degrading enzymes regardless of their province, suggesting a less well-developed population of secondary consumers at these sites, possibly connected with the limited extent of the subsurface biosphere in these high temperature sites. We conclude that in < 80°C springs, chemolithoautotrophic production supports heterotrophs capable of degrading a wide range of organic compounds that do not vary by geological province, even though the taxonomic and respiratory repertoire of chemolithoautotrophs and heterotrophs differ greatly across these regions. 

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