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Enzymes catalyze key reactions within Earth’s life-sustaining biogeochemical cycles. Here, we use metaproteomics to examine the enzymatic capabilities of the microbial community (0.2 to 3 µm) along a 5,000-km-long, 1-km-deep transect in the central Pacific Ocean. Eighty-five percent of total protein abundance was of bacterial origin, with Archaea contributing 1.6%. Over 2,000 functional KEGG Ontology (KO) groups were identified, yet only 25 KO groups contributed over half of the protein abundance, simultaneously indicating abundant key functions and a long tail of diverse functions. Vertical attenuation of individual proteins displayed stratification of nutrient transport, carbon utilization, and environmental stress. The microbial community also varied along horizontal scales, shaped by environmental features specific to the oligotrophic North Pacific Subtropical Gyre, the oxygen-depleted Eastern Tropical North Pacific, and nutrient-rich equatorial upwelling. Some of the most abundant proteins were associated with nitrification and C1 metabolisms, with observed interactions between these pathways. The oxidoreductases nitrite oxidoreductase (NxrAB), nitrite reductase (NirK), ammonia monooxygenase (AmoABC), manganese oxidase (MnxG), formate dehydrogenase (FdoGH and FDH), and carbon monoxide dehydrogenase (CoxLM) displayed distributions indicative of biogeochemical status such as oxidative or nutritional stress, with the potential to be more sensitive than chemical sensors. Enzymes that mediate transformations of atmospheric gases like CO, CO 2 , NO, methanethiol, and methylamines were most abundant in the upwelling region. We identified hot spots of biochemical transformation in the central Pacific Ocean, highlighted previously understudied metabolic pathways in the environment, and provided rich empirical data for biogeochemical models critical for forecasting ecosystem response to climate change.
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Review of oceanic mesoscale processes in the North Pacific: Physical and biogeochemical impacts
Physical transport dynamics occurring at the ocean mesoscale (~ 20 km – 200 km) largely determine the environment in which biogeochemical processes occur. As a result, understanding and modeling mesoscale transport is crucial for determining the physical modulations of the marine ecosystem. This review synthesizes current knowledge of mesoscale eddies and their impacts on the marine ecosystem across most of the North Pacific and its marginal Seas. The North Pacific domain north of 20°N is divided in four regions, and for each region known, unknowns and known-unknowns are summarized with a focus on physical properties, physical-biogeochemical interactions, and the impacts of climate variability and change on the eddy field and on the marine ecosystem.
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- Award ID(s):
- 2219385
- PAR ID:
- 10513861
- Publisher / Repository:
- Elsevier
- Date Published:
- Journal Name:
- Progress in Oceanography
- Volume:
- 212
- Issue:
- C
- ISSN:
- 0079-6611
- Page Range / eLocation ID:
- 102955
- Subject(s) / Keyword(s):
- Mesoscale processes North Pacific fishery biophysical interactions climate variability and change
- Format(s):
- Medium: X
- Sponsoring Org:
- National Science Foundation
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- Free Publicly Accessible Full Text
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Accepted Manuscript1.0
- Journal Article:
- https://doi.org/10.1016/j.pocean.2022.102955
