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Title: Signatures of transposon-mediated genome inflation, host specialization, and photoentrainment in Entomophthora muscae and allied entomophthoralean fungi
Despite over a century of observations, the obligate insect parasites within the order Entomophthorales remain poorly characterized at the genetic level. In this manuscript, we present a genome for a laboratory-tractableEntomophthora muscaeisolate that infects fruit flies. OurE. muscaeassembly is 1.03 Gb, consists of 7810 contigs and contains 81.3% complete fungal BUSCOs. Using a comparative approach with recent datasets from entomophthoralean fungi, we show that giant genomes are the norm within Entomophthoraceae owing to extensive, but not recent, Ty3 retrotransposon activity. In addition, we find thatE. muscaeand its closest allies possess genes that are likely homologs to the blue-light sensorwhite-collar 1, aNeurospora crassagene that has a well-established role in maintaining circadian rhythms. We uncover evidence thatE. muscaediverged from other entomophthoralean fungi by expansion of existing families, rather than loss of particular domains, and possesses a potentially unique suite of secreted catabolic enzymes, consistent withE. muscae’s species-specific, biotrophic lifestyle. Finally, we offer a head-to-head comparison of morphological and molecular data for species within theE. muscaespecies complex that support the need for taxonomic revision within this group. Altogether, we provide a genetic and molecular foundation that we hope will provide a platform for the continued study of the unique biology of entomophthoralean fungi.  more » « less
Award ID(s):
1441715 2125066 2215705 1429826
PAR ID:
10518398
Author(s) / Creator(s):
; ; ; ; ; ; ; ;
Publisher / Repository:
Elife
Date Published:
Journal Name:
eLife
Volume:
12
ISSN:
2050-084X
Page Range / eLocation ID:
RP92863
Subject(s) / Keyword(s):
D. melanogaster Entomophthora muscae Entomophthorales Ty3 retrotransposons Zoopagomycota genetics genomics infectious disease microbiology
Format(s):
Medium: X
Sponsoring Org:
National Science Foundation
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