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1. Advancing ocean monitoring and knowledge for societal benefit: the urgency to expand Argo to OneArgo by 2030

   https://doi.org/10.3389/fmars.2025.1593904  

   Thierry, Virginie; Claustre, Hervé; Pasqueron_de_Fommervault, Orens; Zilberman, Nathalie; Johnson, Kenneth S; King, Brian A; Wijffels, Susan E; Bhaskar, Udaya_T_V S; Balmaseda, Magdalena Alonso; Belbeoch, Mathieu; et al (June 2025, Frontiers in Marine Science)

   The ocean plays an essential role in regulating Earth’s climate, influencing weather conditions, providing sustenance for large populations, moderating anthropogenic climate change, encompassing massive biodiversity, and sustaining the global economy. Human activities are changing the oceans, stressing ocean health, threatening the critical services the ocean provides to society, with significant consequences for human well-being and safety, and economic prosperity. Effective and sustainable monitoring of the physical, biogeochemical state and ecosystem structure of the ocean, to enable climate adaptation, carbon management and sustainable marine resource management is urgently needed. The Argo program, a cornerstone of the Global Ocean Observing System (GOOS), has revolutionized ocean observation by providing real-time, freely accessible global temperature and salinity data of the upper 2,000m of the ocean (Core Argo) using cost-effective simple robotics. For the past 25 years, Argo data have underpinned many ocean, climate and weather forecasting services, playing a fundamental role in safeguarding goods and lives. Argo data have enabled clearer assessments of ocean warming, sea level change and underlying driving processes, as well as scientific breakthroughs while supporting public awareness and education. Building on Argo’s success, OneArgo aims to greatly expand Argo’s capabilities by 2030, expanding to full-ocean depth, collecting biogeochemical parameters, and observing the rapidly changing polar regions. Providing a synergistic subsurface and global extension to several key space-based Earth Observation missions and GOOS components, OneArgo will enable biogeochemical and ecosystem forecasting and new long-term climate predictions for which the deep ocean is a key component. Driving forward a revolution in our understanding of marine ecosystems and the poorly-measured polar and deep oceans, OneArgo will be instrumental to assess sea level change, ocean carbon fluxes, acidification and deoxygenation. Emerging OneArgo applications include new views of ocean mixing, ocean bathymetry and sediment transport, and ecosystem resilience assessment. Implementing OneArgo requires about $100 million annually, a significant increase compared to present Argo funding. OneArgo is a strategic and cost-effective investment which will provide decision-makers, in both government and industry, with the critical knowledge needed to navigate the present and future environmental challenges, and safeguard both the ocean and human wellbeing for generations to come. 

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2. Viral infections likely mediate microbial controls on ecosystem responses to global warming

   https://doi.org/10.1093/femsec/fiad016  

   Wieczynski, Daniel J; Yoshimura, Kristin M; Denison, Elizabeth R; Geisen, Stefan; DeBruyn, Jennifer M; Shaw, A Jonathan; Weston, David J; Pelletier, Dale A; Wilhelm, Steven W; Gibert, Jean P (February 2023, FEMS Microbiology Ecology)

   Abstract Climate change is affecting how energy and matter flow through ecosystems, thereby altering global carbon and nutrient cycles. Microorganisms play a fundamental role in carbon and nutrient cycling and are thus an integral link between ecosystems and climate. Here, we highlight a major black box hindering our ability to anticipate ecosystem climate responses: viral infections within complex microbial food webs. We show how understanding and predicting ecosystem responses to warming could be challenging—if not impossible—without accounting for the direct and indirect effects of viral infections on different microbes (bacteria, archaea, fungi, protists) that together perform diverse ecosystem functions. Importantly, understanding how rising temperatures associated with climate change influence viruses and virus-host dynamics is crucial to this task, yet is severely understudied. In this perspective, we (i) synthesize existing knowledge about virus-microbe-temperature interactions and (ii) identify important gaps to guide future investigations regarding how climate change might alter microbial food web effects on ecosystem functioning. To provide real-world context, we consider how these processes may operate in peatlands—globally significant carbon sinks that are threatened by climate change. We stress that understanding how warming affects biogeochemical cycles in any ecosystem hinges on disentangling complex interactions and temperature responses within microbial food webs. 

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3. High spatial resolution global ocean metagenomes from Bio-GO-SHIP repeat hydrography transects

   https://doi.org/10.1038/s41597-021-00889-9  

   Larkin, Alyse A.; Garcia, Catherine A.; Garcia, Nathan; Brock, Melissa L.; Lee, Jenna A.; Ustick, Lucas J.; Barbero, Leticia; Carter, Brendan R.; Sonnerup, Rolf E.; Talley, Lynne D.; et al (December 2021, Scientific Data)

   null (Ed.)

   Abstract Detailed descriptions of microbial communities have lagged far behind physical and chemical measurements in the marine environment. Here, we present 971 globally distributed surface ocean metagenomes collected at high spatio-temporal resolution. Our low-cost metagenomic sequencing protocol produced 3.65 terabases of data, where the median number of base pairs per sample was 3.41 billion. The median distance between sampling stations was 26 km. The metagenomic libraries described here were collected as a part of a biological initiative for the Global Ocean Ship-based Hydrographic Investigations Program, or “Bio-GO-SHIP.” One of the primary aims of GO-SHIP is to produce high spatial and vertical resolution measurements of key state variables to directly quantify climate change impacts on ocean environments. By similarly collecting marine metagenomes at high spatiotemporal resolution, we expect that this dataset will help answer questions about the link between microbial communities and biogeochemical fluxes in a changing ocean. 

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4. Novel metagenome-assembled genomes involved in the nitrogen cycle from a Pacific oxygen minimum zone

   https://doi.org/10.1038/s43705-021-00030-2  

   Sun, Xin; Ward, Bess B. (December 2021, ISME Communications)

   null (Ed.)

   Abstract Oxygen minimum zones (OMZs) are unique marine regions where broad redox gradients stimulate biogeochemical cycles. Despite the important and unique role of OMZ microbes in these cycles, they are less characterized than microbes from the oxic ocean. Here we recovered 39 high- and medium-quality metagenome-assembled genomes (MAGs) from the Eastern Tropical South Pacific OMZ. More than half of these MAGs were not represented at the species level among 2631 MAGs from global marine datasets. OMZ MAGs were dominated by denitrifiers catalyzing nitrogen loss and especially MAGs with partial denitrification metabolism. A novel bacterial genome with nitrate-reducing potential could only be assigned to the phylum level. A Marine-Group II archaeon was found to be a versatile denitrifier, with the potential capability to respire multiple nitrogen compounds including N 2 O. The newly discovered denitrifying MAGs will improve our understanding of microbial adaptation strategies and the evolution of denitrification in the tree of life. 

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5. Feedbacks between phytoplankton and nutrient cycles in a warming ocean

   https://doi.org/10.1038/s41561-024-01454-w  

   Hutchins, David A; Tagliabue, Alessandro (June 2024, Nature Geoscience)

   Climate warming increasingly drives changes in large-scale ocean physics and biogeochemistry, and affects the kinetics of biological reactions. Together these factors govern phytoplankton productivity, thereby shaping the responses of ocean carbon and nutrient cycles to global change. Here we bring together results from experimental, observational and modelling studies to highlight how interactive feedbacks between warming and nutrient limitation can affect the responses of biogeochemically critical marine primary producers. The availability of many bioactive elements in seawater will be altered markedly in the future, thereby shifting resource deficiencies. These modifications to nutrient limitation when compounded by concurrent warming can change phytoplankton optimum growth temperatures and elemental use efficiencies in group-specific and nutrient-specific ways. The biogeochemical impacts of these nutrient and warming interactions reflect a distinction between the thermal reactivity of major cellular structural elements like nitrogen (N) and catalytic micronutrients like iron (Fe). Integrating the mechanistic feedbacks between warming, nutrient availability and primary productivity into Earth system models is necessary to improve confidence in projections of ocean biogeochemical cycle transformations in a changing climate. 

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