More Like this

1. BEAN: Interpretable and Efficient Learning With Biologically-Enhanced Artificial Neuronal Assembly Regularization

   https://doi.org/10.3389/fnbot.2021.567482  

   Gao, Yuyang; Ascoli, Giorgio A.; Zhao, Liang (June 2021, Frontiers in Neurorobotics)

   null (Ed.)

   Deep neural networks (DNNs) are known for extracting useful information from large amounts of data. However, the representations learned in DNNs are typically hard to interpret, especially in dense layers. One crucial issue of the classical DNN model such as multilayer perceptron (MLP) is that neurons in the same layer of DNNs are conditionally independent of each other, which makes co-training and emergence of higher modularity difficult. In contrast to DNNs, biological neurons in mammalian brains display substantial dependency patterns. Specifically, biological neural networks encode representations by so-called neuronal assemblies: groups of neurons interconnected by strong synaptic interactions and sharing joint semantic content. The resulting population coding is essential for human cognitive and mnemonic processes. Here, we propose a novel Biologically Enhanced Artificial Neuronal assembly (BEAN) regularization 1 to model neuronal correlations and dependencies, inspired by cell assembly theory from neuroscience. Experimental results show that BEAN enables the formation of interpretable neuronal functional clusters and consequently promotes a sparse, memory/computation-efficient network without loss of model performance. Moreover, our few-shot learning experiments demonstrate that BEAN could also enhance the generalizability of the model when training samples are extremely limited. 

   more » « less
2. Semantic similarity loss for neural source code summarization

   https://doi.org/10.1002/smr.2706  

   Su, Chia‐Yi; McMillan, Collin (November 2024, Journal of Software: Evolution and Process)

   Abstract This paper presents a procedure for and evaluation of using a semantic similarity metric as a loss function for neural source code summarization. Code summarization is the task of writing natural language descriptions of source code. Neural code summarization refers to automated techniques for generating these descriptions using neural networks. Almost all current approaches involve neural networks as either standalone models or as part of a pretrained large language models, for example, GPT, Codex, and LLaMA. Yet almost all also use a categorical cross‐entropy (CCE) loss function for network optimization. Two problems with CCE are that (1) it computes loss over each word prediction one‐at‐a‐time, rather than evaluating a whole sentence, and (2) it requires a perfect prediction, leaving no room for partial credit for synonyms. In this paper, we extend our previous work on semantic similarity metrics to show a procedure for using semantic similarity as a loss function to alleviate this problem, and we evaluate this procedure in several settings in both metrics‐driven and human studies. In essence, we propose to use a semantic similarity metric to calculate loss over the whole output sentence prediction per training batch, rather than just loss for each word. We also propose to combine our loss with CCE for each word, which streamlines the training process compared to baselines. We evaluate our approach over several baselines and report improvement in the vast majority of conditions. 

   more » « less
3. NNV2.0: The neural network verification tool

   Diego Manzanas Lopez; Sung Woo Choi; Hoang-Dung Tran; Taylor T. Johnson (July 2023, The 35th International Conference on Computer-Aided Verification)

   This manuscript presents the updated version of the Neural Network Verification (NNV) tool. NNV is a formal verification software tool for deep learning models and cyber-physical systems with neural network components. NNV was first introduced as a verification framework for feedforward and convolutional neural networks, as well as for neural network control systems. Since then, numerous works have made significant improvements in the verification of new deep learning models, as well as tackling some of the scalability issues that may arise when verifying complex models. In this new version of NNV, we introduce verification support for multiple deep learning models, including neural ordinary differential equations, semantic segmentation networks and recurrent neural networks, as well as a collection of reachability methods that aim to reduce the computation cost of reachability analysis of complex neural networks. We have also added direct support for standard input verification formats in the community such as VNNLIB (verification properties), and ONNX (neural networks) formats. We present a collection of experiments in which NNV verifies safety and robustness properties of feedforward, convolutional, semantic segmentation and recurrent neural networks, as well as neural ordinary differential equations and neural network control systems. Furthermore, we demonstrate the capabilities of NNV against a commercially available product in a collection of benchmarks from control systems, semantic segmentation, image classification, and time-series data. 

   more » « less
4. From deep learning to mechanistic understanding in neuroscience: the structure of retinal prediction

   Tanaka, H; Nayebi, A; Maheswaranathan, N; McIntosh, L; Baccus, S; Ganguli, S. (December 2019, Advances in neural information processing systems)

   null (Ed.)

   Recently, deep feedforward neural networks have achieved considerable success in modeling biological sensory processing, in terms of reproducing the input-output map of sensory neurons. However, such models raise profound questions about the very nature of explanation in neuroscience. Are we simply replacing one complex system (a biological circuit) with another (a deep network), without understanding either? Moreover, beyond neural representations, are the deep network's computational mechanisms for generating neural responses the same as those in the brain? Without a systematic approach to extracting and understanding computational mechanisms from deep neural network models, it can be difficult both to assess the degree of utility of deep learning approaches in neuroscience, and to extract experimentally testable hypotheses from deep networks. We develop such a systematic approach by combining dimensionality reduction and modern attribution methods for determining the relative importance of interneurons for specific visual computations. We apply this approach to deep network models of the retina, revealing a conceptual understanding of how the retina acts as a predictive feature extractor that signals deviations from expectations for diverse spatiotemporal stimuli. For each stimulus, our extracted computational mechanisms are consistent with prior scientific literature, and in one case yields a new mechanistic hypothesis. Thus overall, this work not only yields insights into the computational mechanisms underlying the striking predictive capabilities of the retina, but also places the framework of deep networks as neuroscientific models on firmer theoretical foundations, by providing a new roadmap to go beyond comparing neural representations to extracting and understand computational mechanisms. 

   more » « less
5. Spiking Neural Networks and Their Applications: A Review

   https://doi.org/10.3390/brainsci12070863  

   Yamazaki, Kashu; Vo-Ho, Viet-Khoa; Bulsara, Darshan; Le, Ngan (July 2022, Brain Sciences)

   The past decade has witnessed the great success of deep neural networks in various domains. However, deep neural networks are very resource-intensive in terms of energy consumption, data requirements, and high computational costs. With the recent increasing need for the autonomy of machines in the real world, e.g., self-driving vehicles, drones, and collaborative robots, exploitation of deep neural networks in those applications has been actively investigated. In those applications, energy and computational efficiencies are especially important because of the need for real-time responses and the limited energy supply. A promising solution to these previously infeasible applications has recently been given by biologically plausible spiking neural networks. Spiking neural networks aim to bridge the gap between neuroscience and machine learning, using biologically realistic models of neurons to carry out the computation. Due to their functional similarity to the biological neural network, spiking neural networks can embrace the sparsity found in biology and are highly compatible with temporal code. Our contributions in this work are: (i) we give a comprehensive review of theories of biological neurons; (ii) we present various existing spike-based neuron models, which have been studied in neuroscience; (iii) we detail synapse models; (iv) we provide a review of artificial neural networks; (v) we provide detailed guidance on how to train spike-based neuron models; (vi) we revise available spike-based neuron frameworks that have been developed to support implementing spiking neural networks; (vii) finally, we cover existing spiking neural network applications in computer vision and robotics domains. The paper concludes with discussions of future perspectives. 

   more » « less