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Title: Long ssRNA undergoes continuous compaction in the presence of polyvalent cations
In the presence of polyvalent cations, long double-stranded DNA (dsDNA) in dilute solution undergoes a single- molecule, first-order, phase transition (‘‘condensation’’), a phenomenon that has been documented and analyzed by many years of experimental and theoretical studies. There has been no systematic effort, however, to determine whether long single- stranded RNA (ssRNA) shows an analogous behavior. In this study, using dynamic light scattering, analytical ultracentrifugation, and gel electrophoresis, we examine the effects of increasing polyvalent cation concentrations on the effective size of long ssRNAs ranging from 3000 to 12,000 nucleotides. Our results indicate that ssRNA does not undergo a discontinuous conden- sation as does dsDNA but rather a ‘‘continuous’’ decrease in size with increasing polyvalent cation concentration. And, instead of the 10-fold decrease in size shown by long dsDNA, we document a 50% decrease, as demonstrated for a range of lengths and sequences of ssRNA.  more » « less
Award ID(s):
2103700
PAR ID:
10523475
Author(s) / Creator(s):
; ; ; ; ;
Publisher / Repository:
Elsevier, Cell Press
Date Published:
Journal Name:
Biophysical journal
ISSN:
0006-3495
Format(s):
Medium: X
Sponsoring Org:
National Science Foundation
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